当前解析结果
SmilChr01G004112| 统一新 Gene ID | SmilChr01G004112 |
|---|---|
| 名称 | SmilChr01G004112 |
| 描述 | magnesium transporter MRS2-I-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 59633189 - 59635958 / - |
| NCBI Gene ID | LOC130999556 |
|---|---|
| GeneID | 130999556 |
| locus_tag | - |
| NCBI Name | LOC130999556 |
| 原始查询 | SmilChr01G004112 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | magnesium transporter MRS2-I-like |
| 产物 | magnesium transporter MRS2-I-like |
| Arabidopsis | AT5G09690 (MGT7)magnesium transporter 7 [Source:NCBI gene (formerly Entrezgene);Acc:830828] identity=60.4; qcov=1.02; evalue=2.89e-153; confidence=high |
| Rice | Os06g0650800 (OsMGT)- identity=48; qcov=1.04; evalue=1.73e-108; confidence=high |
| GO | GO:0015095 (magnesium ion transmembrane transporter activity); GO:0015693 (magnesium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01544 (CorA); PF22099 (MRS2-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999556 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781103.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781103.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781103.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781103.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781103.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:59633550 |
GCC |
G |
2bp_deletion | frameshift_variant | 2 | B48,C26 |
Chr1:59633550 |
GCC |
G |
2bp_deletion | CDS_variant | 2 | B48,C26 |
Chr1:59633565 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B48,C26 |
Chr1:59633565 |
C |
CA |
1bp_insertion | CDS_variant | 2 | B48,C26 |
Chr1:59633567 |
ATG |
A |
2bp_deletion | frameshift_variant | 2 | B48,C26 |
Chr1:59633567 |
ATG |
A |
2bp_deletion | CDS_variant | 2 | B48,C26 |
Chr1:59633573 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B48,C26 |
Chr1:59633573 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B48,C26 |
Chr1:59633575 |
C |
CAA |
2bp_insertion | frameshift_variant | 5 | B35,B48,B91,C26,C37 |
Chr1:59633575 |
C |
CAA |
2bp_insertion | CDS_variant | 5 | B35,B48,B91,C26,C37 |
Chr1:59633584 |
ATT |
* |
2bp_deletion | CDS_variant | 2 | B35,B91 |
Chr1:59633618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,B59,C15,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781103.1PF22099
MRS2-like 39-227 aa
PF22099
MRS2-like 258-307 aa
PF01544
CorA 259-368 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781103.1 |
Pfam | PF22099 |
MRS2-like | Family | 39 | 227 | 1.1e-36 | 127.0 | Magnesium transporter MRS2-like |
XP_057781103.1 |
Pfam | PF22099 |
MRS2-like | Family | 258 | 307 | 1.1e-36 | 127.0 | Magnesium transporter MRS2-like |
XP_057781103.1 |
Pfam | PF01544 |
CorA | Family | 259 | 368 | 7.3e-10 | 39.3 | CorA-like Mg2+ transporter protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。