当前解析结果
SmilChr01G004125| 统一新 Gene ID | SmilChr01G004125 |
|---|---|
| 名称 | SmilChr01G004125 |
| 描述 | myosin-9-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 59738429 - 59750632 / + |
| NCBI Gene ID | LOC130999626 |
|---|---|
| GeneID | 130999626 |
| locus_tag | - |
| NCBI Name | LOC130999626 |
| 原始查询 | SmilChr01G004125 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin-9-like |
| 产物 | myosin-9-like |
| Arabidopsis | AT1G54560 (XIE)Myosin family protein with Dil domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:841898] identity=65.8; qcov=0.921; evalue=0; confidence=high |
| Rice | Os06g0488200- identity=62.3; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00063 (Myosin_head); PF00612 (IQ); PF02736 (Myosin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999626 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057781198.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057781198.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057781198.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057781198.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057781198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:59739373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B2 |
Chr1:59740198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:59740246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B131,C26 |
Chr1:59740396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:59740439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
Chr1:59740502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B131,B66,C26 |
Chr1:59740505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,B85 |
Chr1:59741999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:59742773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr1:59742797 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C82 |
Chr1:59742797 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C82 |
Chr1:59743146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B40,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781198.1PF02736
Myosin_N 8-55 aa
PF00063
Myosin_head 65-723 aa
PF00612
IQ 763-777 aa
PF00612
IQ 838-850 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781198.1 |
Pfam | PF02736 |
Myosin_N | Domain | 8 | 55 | 1.2e-10 | 41.6 | Myosin N-terminal SH3-like domain |
XP_057781198.1 |
Pfam | PF00063 |
Myosin_head | Domain | 65 | 723 | 7.8e-254 | 844.7 | Myosin head (motor domain) |
XP_057781198.1 |
Pfam | PF00612 |
IQ | Motif | 763 | 777 | 2.5e-12 | 46.1 | IQ calmodulin-binding motif |
XP_057781198.1 |
Pfam | PF00612 |
IQ | Motif | 838 | 850 | 2.5e-12 | 46.1 | IQ calmodulin-binding motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。