当前解析结果
SmilChr01G004141| 统一新 Gene ID | SmilChr01G004141 |
|---|---|
| 名称 | SmilChr01G004141 |
| 描述 | structural maintenance of chromosomes protein 1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 59900126 - 59911552 / - |
| NCBI Gene ID | LOC130999765 |
|---|---|
| GeneID | 130999765 |
| locus_tag | - |
| NCBI Name | LOC130999765 |
| 原始查询 | SmilChr01G004141 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | structural maintenance of chromosomes protein 1 |
| 产物 | structural maintenance of chromosomes protein 1 |
| Arabidopsis | AT3G54670 (TTN8)Structural maintenance of chromosomes (SMC) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824632] identity=63.4; qcov=1; evalue=0; confidence=high |
| Rice | Os12g0641500- identity=62.3; qcov=0.489; evalue=0; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005694 (chromosome); GO:0007062 (sister chromatid cohesion); GO:0008278 (cohesin complex); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF02463 (SMC_N); PF06470 (SMC_hinge); PF13304 (AAA_21); PF13476 (AAA_23); PF13555 (AAA_29) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999765 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781377.1 |
| 2 | Chromosome | 染色体 | 1.00000 | XP_057781377.1 |
| 3 | Nucleoplasm | 核质 | 0.60000 | XP_057781377.1 |
| 4 | Chromatin | 染色质 | 0.20000 | XP_057781377.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781377.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:59900512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B62,B70,B84,C41,C52 |
Chr1:59902176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr1:59902318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:59904672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr1:59904842 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr1:59904842 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B104 |
Chr1:59906962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B19,C29,C9 |
Chr1:59909542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr1:59910893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B5,C22 |
Chr1:59910899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:59910932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr1:59911121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B139,B22,B41,B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781377.1PF02463
SMC_N 10-1207 aa
PF13555
AAA_29 12-55 aa
PF13476
AAA_23 12-251 aa
PF13304
AAA_21 33-64 aa
PF06470
SMC_hinge 515-631 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781377.1 |
Pfam | PF02463 |
SMC_N | Domain | 10 | 1207 | 3.3e-49 | 168.0 | RecF/RecN/SMC N terminal domain |
XP_057781377.1 |
Pfam | PF13555 |
AAA_29 | Domain | 12 | 55 | 2.1e-07 | 31.3 | P-loop containing region of AAA domain |
XP_057781377.1 |
Pfam | PF13476 |
AAA_23 | Domain | 12 | 251 | 1.6e-13 | 52.5 | AAA domain |
XP_057781377.1 |
Pfam | PF13304 |
AAA_21 | Domain | 33 | 64 | 2.5e-13 | 51.4 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057781377.1 |
Pfam | PF06470 |
SMC_hinge | Domain | 515 | 631 | 7.8e-28 | 97.9 | SMC proteins Flexible Hinge Domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。