当前解析结果
SmilChr01G004149| 统一新 Gene ID | SmilChr01G004149 |
|---|---|
| 名称 | SmilChr01G004149 |
| 描述 | protein CHROMATIN REMODELING 8 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60016671 - 60023396 / - |
| NCBI Gene ID | LOC130999843 |
|---|---|
| GeneID | 130999843 |
| locus_tag | - |
| NCBI Name | LOC130999843 |
| 原始查询 | SmilChr01G004149 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CHROMATIN REMODELING 8 |
| 产物 | protein CHROMATIN REMODELING 8 |
| Arabidopsis | AT2G18760 (CHR8)chromatin remodeling 8 [Source:NCBI gene (formerly Entrezgene);Acc:816391] identity=58.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0102800 (CSB)- identity=60.2; qcov=0.783; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006283 (transcription-coupled nucleotide-excision repair); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII); PF25875 (WHD_Rad26_CSB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999843 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781500.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057781500.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057781500.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057781500.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057781500.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60016987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B45 |
Chr1:60016997 |
C |
T |
EMS_canonical_SNV | stop_gained | 41 | A13,A19,A2,A6,B101,B102,B105,B107,B112,B114,B115,B118,B121,B131,B15,B17,B2,B20,B30,B38,B39,B53,B57,B68,B82,B9,C11,C12,C38,C44,C45,C54,C6,C67,C7,C70,C75,C84,C86,C87,D5 |
Chr1:60017012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B45 |
Chr1:60017125 |
CA |
C |
1bp_deletion | frameshift_variant | 58 | A1,A15,A23,A4,B1,B100,B106,B11,B129,B135,B138,B140,B15,B24,B25,B26,B27,B33,B34,B39,B40,B41,B44,B56,B57,B73,B76,B81,B83,B89,B90,B91,B92,B97,C13,C14,C15,C18,C19,C2,C21,C22,C29,C3,C31,C37,C4,C40,C55,C59,C60,C61,C62,C73,C77,C8,C83,D7 |
Chr1:60017137 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B1,B125,B35,B78,B90,B92,C48,D6 |
Chr1:60017148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B57,D2 |
Chr1:60017179 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | C87 |
Chr1:60017179 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C87 |
Chr1:60017182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr1:60017189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C16,C75 |
Chr1:60017207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B32 |
Chr1:60017260 |
G |
GAT |
2bp_insertion | frameshift_variant | 10 | A19,B106,B128,B15,B57,B91,B99,C26,C40,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781500.1PF04851
ResIII 380-575 aa
PF00176
SNF2-rel_dom 384-706 aa
PF00271
Helicase_C 797-909 aa
PF25875
WHD_Rad26_CSB 1216-1277 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781500.1 |
Pfam | PF04851 |
ResIII | Family | 380 | 575 | 2.1e-07 | 31.7 | Type III restriction enzyme, res subunit |
XP_057781500.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 384 | 706 | 7.3e-82 | 275.4 | SNF2-related domain |
XP_057781500.1 |
Pfam | PF00271 |
Helicase_C | Domain | 797 | 909 | 7.7e-26 | 91.2 | Helicase conserved C-terminal domain |
XP_057781500.1 |
Pfam | PF25875 |
WHD_Rad26_CSB | Domain | 1216 | 1277 | 6.5e-15 | 55.7 | Rad26/CSB winged helix DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。