Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004155`

染色体: Chr01 坐标: 60062886-60068092 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004155`
名称	SmilChr01G004155
描述	glutathione gamma-glutamylcysteinyltransferase 1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60062886 - 60068092 / `+`

ID 对照

NCBI Gene ID	`LOC130999924`
GeneID	`130999924`
locus_tag	`-`
NCBI Name	`LOC130999924`
原始查询	`SmilChr01G004155`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutathione gamma-glutamylcysteinyltransferase 1
产物	glutathione gamma-glutamylcysteinyltransferase 1
Arabidopsis	`AT5G44070` (CAD1) phytochelatin synthase 1 (PCS1) [Source:NCBI gene (formerly Entrezgene);Acc:834430] identity=64.6; qcov=0.992; evalue=0; confidence=high
Rice	`Os06g0102300` (OsPCS2b) - identity=59; qcov=0.99; evalue=0; confidence=high
GO	GO:0010038 (response to metal ion); GO:0010273 (detoxification of copper ion); GO:0016756 (glutathione gamma-glutamylcysteinyltransferase activity); GO:0046872 (metal ion binding); GO:0046938 (phytochelatin biosynthetic process); GO:0098849 (cellular detoxification of cadmium ion)
KEGG	-
Pfam	PF05023 (Phytochelatin); PF09328 (Phytochelatin_C)
InterPro	-
eggNOG	-
NR	GeneID:130999924

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057781609.1`
2	Cytoplasm	细胞质	0.60000	`XP_057781609.1`
3	Nucleus	细胞核	0.20000	`XP_057781609.1`
4	Chromosome	染色体	0.00000	`XP_057781609.1`
5	Centromere	着丝粒	0.00000	`XP_057781609.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60063032`	`TTA`	`T`	2bp_deletion	frameshift_variant	1	B37
`Chr1:60063032`	`TTA`	`T`	2bp_deletion	CDS_variant	1	B37
`Chr1:60064323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B41
`Chr1:60064342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr1:60065295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B72
`Chr1:60065346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:60065635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B62,B84,C41,C52
`Chr1:60066782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B137,B32,B7,B76
`Chr1:60066811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,B29,B4
`Chr1:60066948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr1:60067065`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B27
`Chr1:60067065`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781609.1

597 aa

298

597

Phytochelatin

Phytochelatin_C

PF05023 Phytochelatin 7-213 aa PF09328 Phytochelatin_C 231-484 aa

XP_057781618.1

498 aa

249

498

Phytochelatin

Phytochelatin_C

PF05023 Phytochelatin 7-213 aa PF09328 Phytochelatin_C 231-484 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781609.1`	Pfam	`PF05023`	Phytochelatin	Domain	7	213	3.1e-91	305.0	Phytochelatin synthase
`XP_057781609.1`	Pfam	`PF09328`	Phytochelatin_C	Family	231	484	6.4e-109	364.0	Domain of unknown function (DUF1984)
`XP_057781618.1`	Pfam	`PF05023`	Phytochelatin	Domain	7	213	2.2e-91	305.5	Phytochelatin synthase
`XP_057781618.1`	Pfam	`PF09328`	Phytochelatin_C	Family	231	484	4.1e-109	364.6	Domain of unknown function (DUF1984)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925626.1
CTTTCAAAACGTTTTATTTACGCGGGGCCTTAACCGATCCTAATTTTTTTTTTTCTCTCCACAAGTTGCTTGGTCGAAACCCTTCGTCCGCTCGCACACACATACACATAGTGTAGAATTGTGTGGTGATCATGGCGATGGCAAGTTTATACCGGCGTATCCTCCCTTCTCCACCTGCCATTGACTTCGCTTCCTCCGAAGGCAAGAAACTTTTTACAGAAGCCATTCACAGTGGAACTATGGAAGGATTCTTCAAGTTG...

XM_057925635.1
CTTTCAAAACGTTTTATTTACGCGGGGCCTTAACCGATCCTAATTTTTTTTTTTCTCTCCACAAGTTGCTTGGTCGAAACCCTTCGTCCGCTCGCACACACATACACATAGTGTAGAATTGTGTGGTGATCATGGCGATGGCAAGTTTATACCGGCGTATCCTCCCTTCTCCACCTGCCATTGACTTCGCTTCCTCCGAAGGCAAGAAACTTTTTACAGAAGCCATTCACAGTGGAACTATGGAAGGATTCTTCAAGTTG...

CDS

2 records

下载 CDS FASTA

LOC130999924
ATGGCGATGGCAAGTTTATACCGGCGTATCCTCCCTTCTCCACCTGCCATTGACTTCGCTTCCTCCGAAGGCAAGAAACTTTTTACAGAAGCCATTCACAGTGGAACTATGGAAGGATTCTTCAAGTTGATTTCTTATTTCCAGACACAATCTGAACCTGCATATTGTGGTTTGGCTAGCCTTTCAATGGTTTTGAACGCCCTTGCCATTGACCCTGGTAGAAAATGGAAAGGGCCTTGGAGATGGTTTGATGAAAACAT...

Protein

2 records

下载 Protein FASTA

XP_057781609.1
MAMASLYRRILPSPPAIDFASSEGKKLFTEAIHSGTMEGFFKLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDENMLDCCEPLEKVKNTGITFGKVVCLAHCAGAKVEAFRTTQSTIDDFRKYVMACTSSEDCHVISSYHRGVFNQTGTGHFSPIGGYHAERDMALILDVARFKYPPHWVPLRLLWEAMDTVDESNGLHRGYLLVTRHQRAPALLYTLSCKHESWITTAKYLMDDVPVLLSSDNMQNVK...

XP_057781618.1
MAMASLYRRILPSPPAIDFASSEGKKLFTEAIHSGTMEGFFKLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDENMLDCCEPLEKVKNTGITFGKVVCLAHCAGAKVEAFRTTQSTIDDFRKYVMACTSSEDCHVISSYHRGVFNQTGTGHFSPIGGYHAERDMALILDVARFKYPPHWVPLRLLWEAMDTVDESNGLHRGYLLVTRHQRAPALLYTLSCKHESWITTAKYLMDDVPVLLSSDNMQNVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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