Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004156`

染色体: Chr01 坐标: 60068353-60073287 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004156`
名称	SmilChr01G004156
描述	succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60068353 - 60073287 / `-`

ID 对照

NCBI Gene ID	`LOC130999948`
GeneID	`130999948`
locus_tag	`-`
NCBI Name	`LOC130999948`
原始查询	`SmilChr01G004156`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like
产物	succinate--CoA ligase [ADP-forming] subunit beta%2C mitochondrial-like
Arabidopsis	`AT2G20420` (AT2G20420) ATP citrate lyase (ACL) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816561] identity=84.8; qcov=0.998; evalue=0; confidence=high
Rice	`Os02g0621700` - identity=84.2; qcov=0.995; evalue=0; confidence=high
GO	GO:0004775 (succinate-CoA ligase (ADP-forming) activity); GO:0005524 (ATP binding); GO:0005739 (mitochondrion); GO:0006099 (tricarboxylic acid cycle); GO:0006104 (succinyl-CoA metabolic process); GO:0042709 (succinate-CoA ligase complex)
KEGG	smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00549 (Ligase_CoA); PF08442 (ATP-grasp_2)
InterPro	-
eggNOG	-
NR	GeneID:130999948

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057781641.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057781641.1`
3	Nucleus	细胞核	0.00000	`XP_057781641.1`
4	Chromosome	染色体	0.00000	`XP_057781641.1`
5	Centromere	着丝粒	0.00000	`XP_057781641.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60068722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr1:60068734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:60069216`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B57,C1,C41
`Chr1:60069216`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B57,C1,C41
`Chr1:60069249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B72
`Chr1:60069254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr1:60069636`	`C`	`CAA`	2bp_insertion	frameshift_variant	6	B121,B35,B49,B51,B81,C37
`Chr1:60069638`	`TGC`	`T`	2bp_deletion	frameshift_variant	6	B121,B35,B49,B51,B81,C37
`Chr1:60069649`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	B97
`Chr1:60069649`	`TCC`	`T`	2bp_deletion	CDS_variant	1	B97
`Chr1:60072268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:60072691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B62,B70,B84,C41,C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781641.1

421 aa

210

421

ATP-grasp_2

Ligase_CoA

PF08442 ATP-grasp_2 29-237 aa PF00549 Ligase_CoA 297-417 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781641.1`	Pfam	`PF08442`	ATP-grasp_2	Domain	29	237	4.4e-58	196.9	ATP-grasp domain
`XP_057781641.1`	Pfam	`PF00549`	Ligase_CoA	Domain	297	417	1.4e-37	129.5	CoA-ligase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925658.1
ATCCCACTTCCATCTTCAAACAACTTGCGAGAAATGGTGCGACGATTGCTCGGAAATCTCGCTGCTCGATCTCTCTCCGTCGCTGGAAAATGGCAGCAGCAGCAGCTCCGCCGTCTCAACATACACGAGTATCAGGGAGCTGATTTGATGAGCAAGCATGGAATCAATGTTCCAAAAGGTGTCGCAGTTGGTTCTCTTGATGAAGTCAAGAAGGCATTACGGGATGTATTCCCCAACCAGAGTGAGGTGGTGGTGAAGTC...

CDS

1 records

下载 CDS FASTA

LOC130999948
ATGGTGCGACGATTGCTCGGAAATCTCGCTGCTCGATCTCTCTCCGTCGCTGGAAAATGGCAGCAGCAGCAGCTCCGCCGTCTCAACATACACGAGTATCAGGGAGCTGATTTGATGAGCAAGCATGGAATCAATGTTCCAAAAGGTGTCGCAGTTGGTTCTCTTGATGAAGTCAAGAAGGCATTACGGGATGTATTCCCCAACCAGAGTGAGGTGGTGGTGAAGTCACAAATCCTTGCTGGTGGGCGAGGGCTTGGAAC...

Protein

1 records

下载 Protein FASTA

XP_057781641.1
MVRRLLGNLAARSLSVAGKWQQQQLRRLNIHEYQGADLMSKHGINVPKGVAVGSLDEVKKALRDVFPNQSEVVVKSQILAGGRGLGTFKSGLKGGVHIVEADKVANIAGQMLGQTLVTKQTGAQGKVVSKVYLCEKLSLVNEMYFAITLDHKSAGPLIISCKKGGTSIEDLAEKHPELIVKVPIDVFTGITDKDAAKVVDGLSPKVADKNASIEQVKKLYELFCKCDCTLLEINPIAETSDKQLVAADAKLNFDDNAAFR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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