Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004166`

染色体: Chr01 坐标: 60157280-60162091 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004166`
名称	SmilChr01G004166
描述	protein PHOSPHATE STARVATION RESPONSE 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60157280 - 60162091 / `-`

ID 对照

NCBI Gene ID	`LOC131000043`
GeneID	`131000043`
locus_tag	`-`
NCBI Name	`LOC131000043`
原始查询	`SmilChr01G004166`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PHOSPHATE STARVATION RESPONSE 1-like
产物	protein PHOSPHATE STARVATION RESPONSE 1-like
Arabidopsis	`AT4G28610` (PHR1) phosphate starvation response 1 [Source:NCBI gene (formerly Entrezgene);Acc:828979] identity=53.4; qcov=0.722; evalue=5.19e-97; confidence=high
Rice	`Os03g0329900` (PHR1) - identity=49.5; qcov=0.684; evalue=8.76e-81; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF14379 (Myb_CC_LHEQLE)
InterPro	-
eggNOG	-
NR	GeneID:131000043

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781780.1`
2	Chromosome	染色体	0.00000	`XP_057781780.1`
3	Centromere	着丝粒	0.00000	`XP_057781780.1`
4	Chromatin	染色质	0.00000	`XP_057781780.1`
5	Telomere	端粒	0.00000	`XP_057781780.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60157785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,C47,D11
`Chr1:60157808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B139,C5
`Chr1:60157830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,A21,B126
`Chr1:60157899`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C25
`Chr1:60157899`	`CT`	`C`	1bp_deletion	CDS_variant	1	C25
`Chr1:60157950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:60158439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,C27,C49
`Chr1:60159719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,C5
`Chr1:60159778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,D11
`Chr1:60160115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B82,C26,C37
`Chr1:60160330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,B7
`Chr1:60160406`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781780.1

480 aa

240

480

Myb_DNA-binding

Myb_CC_LHEQLE

PF00249 Myb_DNA-binding 260-311 aa PF14379 Myb_CC_LHEQLE 343-389 aa

XP_057781788.1

472 aa

236

472

Myb_DNA-binding

Myb_CC_LHEQLE

PF00249 Myb_DNA-binding 252-303 aa PF14379 Myb_CC_LHEQLE 335-381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781780.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	260	311	2.6e-09	37.8	Myb-like DNA-binding domain
`XP_057781780.1`	Pfam	`PF14379`	Myb_CC_LHEQLE	Family	343	389	3e-25	88.4	MYB-CC type transfactor, LHEQLE motif
`XP_057781788.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	252	303	2.6e-09	37.8	Myb-like DNA-binding domain
`XP_057781788.1`	Pfam	`PF14379`	Myb_CC_LHEQLE	Family	335	381	3e-25	88.4	MYB-CC type transfactor, LHEQLE motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925797.1
GCGTGAGAAAAGTAGAGCATAAAAAAATGGGATTTGGGAAGAAGCCAAATATCAGGAAAGAGAGAGAGAGAGCAAAGGAAAAGGCGCACTCTTTACCGTTCAATTCTTTCGAGCACTCGCCGGGGGTCGACACCCGTAGAAAAATCCCCATTTTTTTCGTTATAATCGAAGCCTCTACACGCTCGCAGCTATGCTCTACGTACATATCGTCTGCCTATAGCAAGCTCAGCTATCGTCGTCTTTTGCGCGGGATCTTTCTC...

XM_057925805.1
CCAAATATCAGGAAAGAGAGAGAGAGAGCAAAGGAAAAGGCGCACTCTTTACCGTTCAATTCTTTCGAGCACTCGCCGGGGGTCGACACCCGTAGAAAAATCCCCATTTTTTTCGTTATAATCGAAGCCTCTACACGCTCGCAGCTATGCTCTACGTACATATCGTCTGCCTATAGCAAGCTCAGCTATCGTCGTCTTTTGCGCGGGATCTTTCTCTGCTCGATGTTTCTGTGATGGAGCTTTTCCAATTATACATTTAT...

CDS

2 records

下载 CDS FASTA

LOC131000043
ATGGGAACAAAACCAGCTTTATCTGTTCAAACACCAAGTGCTGGGCAACTGGTTAACTGTGGGGCATCTGGAGCTTTATCTTCTTCTTTGTCTGTGCTTTCGACTCCTCAAGAGGGAAACTACCCCAACTTTTCAGACTCCCATCAGAGTTCCTTGGAGAGGAGGGTATTCATTCAGCATCCTCCACCTGTCATTTCACCATTGCCTTCCAACAACGGGGTTGCTGGACATATGTTTTCTTCATCTTCAGGATTTTCTAG...

Protein

2 records

下载 Protein FASTA

XP_057781780.1
MGTKPALSVQTPSAGQLVNCGASGALSSSLSVLSTPQEGNYPNFSDSHQSSLERRVFIQHPPPVISPLPSNNGVAGHMFSSSSGFSSNLHFSSVPQQDKHPTQSPFISQSTNSGSANLVQHSPGSGFLQSTASSNSNKDDMNAWSTDALPDFFDFQNSQPDDSKKISAGVLSDLGKSGEWQDWADDLITDNDPLTSDWNEILADASTVDPELKLLRQISNQSTCMPTQPHVSQQPLATHIETSSAAGHSSSANSAQAKQR...

XP_057781788.1
MGTKPALSVQTPSAGQLVNCGASGALSSSLSVLSTPQEGNYPNFSDSHQSSLERRVFIQHPPPVISPLPSNNGVAGHMFSSSSGFSSNLHFSSVPQQDKHPTQSPFISQSTNSGSANLVQHSPGSGFLQSTASSNSNKDDMNAWSTDALPDFFDFQNSQPDDSKKISAGVLSDLGKSGEWQDWADDLITDNDPLTSDWNEILADASTVDPELKSTCMPTQPHVSQQPLATHIETSSAAGHSSSANSAQAKQRMRWTPELH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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