Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004170`

染色体: Chr01 坐标: 60188254-60191800 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004170`
名称	SmilChr01G004170
描述	aspartate carbamoyltransferase 1, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60188254 - 60191800 / `-`

ID 对照

NCBI Gene ID	`LOC131000066`
GeneID	`131000066`
locus_tag	`-`
NCBI Name	`LOC131000066`
原始查询	`SmilChr01G004170`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aspartate carbamoyltransferase 1, chloroplastic-like
产物	aspartate carbamoyltransferase 1%2C chloroplastic-like
Arabidopsis	`AT3G20330` (PYRB) PYRIMIDINE B [Source:NCBI gene (formerly Entrezgene);Acc:821577] identity=72.5; qcov=1; evalue=0; confidence=high
Rice	`Os08g0248800` (PYRB) - identity=82.1; qcov=0.775; evalue=0; confidence=high
GO	GO:0004070 (aspartate carbamoyltransferase activity); GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process); GO:0006520 (amino acid metabolic process); GO:0016597 (amino acid binding)
KEGG	smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00185 (OTCace); PF02729 (OTCace_N)
InterPro	-
eggNOG	-
NR	GeneID:131000066

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057781811.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057781811.1`
3	Nucleus	细胞核	0.00000	`XP_057781811.1`
4	Chromosome	染色体	0.00000	`XP_057781811.1`
5	Centromere	着丝粒	0.00000	`XP_057781811.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60188937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:60190594`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	B31
`Chr1:60190594`	`TTG`	`T`	2bp_deletion	CDS_variant	1	B31
`Chr1:60190617`	`GT`	`G`	1bp_deletion	frameshift_variant	2	C51,C67
`Chr1:60190617`	`GT`	`G`	1bp_deletion	CDS_variant	2	C51,C67
`Chr1:60190647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B91,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781811.1

404 aa

202

404

OTCace_N

OTCace

PF02729 OTCace_N 100-241 aa PF00185 OTCace 248-399 aa

XP_057781820.1

404 aa

202

404

OTCace_N

OTCace

PF02729 OTCace_N 100-241 aa PF00185 OTCace 248-399 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781811.1`	Pfam	`PF02729`	OTCace_N	Domain	100	241	1.6e-47	162.0	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
`XP_057781811.1`	Pfam	`PF00185`	OTCace	Domain	248	399	2.2e-34	119.5	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
`XP_057781820.1`	Pfam	`PF02729`	OTCace_N	Domain	100	241	1.6e-47	162.0	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
`XP_057781820.1`	Pfam	`PF00185`	OTCace	Domain	248	399	2.2e-34	119.5	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925837.1
TGATTTTTCATTCAAAACATGTATTGCATATTTTATTCAAGACGTAATTAAATGAAATAAAAAAAATGTGATCTATCTACAAAATAAGGAAAAAAACGAAGAAAATAATAATTTTAAAAAAAATAAAAATAATTTTTTTTACATAAATTATGATTATGATATTGATTTCTCTTAATTTTAAACTTTGAACGTGTTGTTATTTCCACTGCCGAGTTCGCCGTCTGGTATGTTGGGCTGCTCATTGCGGGAGAATTGCCGAA...

XM_057925828.1
ATTGATTTCTCTTAATTTTAAACTTTGAACGTGTTGTTATTTCCACTGCCGAGTTCGCCGTCTGGTATGTTGGGCTGCTCATTGCGGGAGAATTGCCGAACAGAGCGCTGCCGCGAGGGAGATAGATAGATAGCAACATCACATTTAGAAGCCACATTATATCTTACAACTTCGCCGTCTTGTTTCCTTTTTTCACCATCTTACAAGTTGAGCTTCGATATCTGATTAGGTATATGGCATCATCTTTCATATTGTCCACT...

CDS

2 records

下载 CDS FASTA

LOC131000066
ATGGCATCATCTTTCATATTGTCCACTTGCACCTTAAATGGGAGTGTACTTGCTCCTAAGGCTTCGAAGACCAATGCTGAGTCTGTTTGCAATCATCTGAATGGTAGCTTTAAACTAACATATAGATCTCTGTCCATATCTGCATCTGCCGACACACCACATTCATCGGCTTTCCCAAATCGGAAAGCATTTGACTGGAAACAAGGAAACTTGCCTTTGAGGAGTGCAGTCAAATGCAGAGCGCTGAATGTTGAGACACA...

Protein

2 records

下载 Protein FASTA

XP_057781811.1
MASSFILSTCTLNGSVLAPKASKTNAESVCNHLNGSFKLTYRSLSISASADTPHSSAFPNRKAFDWKQGNLPLRSAVKCRALNVETQPLFSLGSKFQLEDVIEAQQFDRDTLSAIFDVALEMEKIEKNSTGSNLLQGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYTDIIVMRHFESGAARRAAATANIPVINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLAY...

XP_057781820.1
MASSFILSTCTLNGSVLAPKASKTNAESVCNHLNGSFKLTYRSLSISASADTPHSSAFPNRKAFDWKQGNLPLRSAVKCRALNVETQPLFSLGSKFQLEDVIEAQQFDRDTLSAIFDVALEMEKIEKNSTGSNLLQGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYTDIIVMRHFESGAARRAAATANIPVINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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