当前解析结果
SmilChr01G004172| 统一新 Gene ID | SmilChr01G004172 |
|---|---|
| 名称 | SmilChr01G004172 |
| 描述 | plasmodesmata-located protein 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60200952 - 60202141 / + |
| NCBI Gene ID | LOC131010962 |
|---|---|
| GeneID | 131010962 |
| locus_tag | - |
| NCBI Name | LOC131010962 |
| 原始查询 | SmilChr01G004172 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plasmodesmata-located protein 2-like |
| 产物 | plasmodesmata-located protein 2-like |
| Arabidopsis | AT1G04520 (PDLP2)plasmodesmata-located protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:839502] identity=44.2; qcov=0.989; evalue=5.47e-63; confidence=medium |
| Rice | Os03g0140500- identity=45.2; qcov=0.916; evalue=3.39e-45; confidence=medium |
| GO | GO:0009506 (plasmodesma); GO:0010497 (plasmodesmata-mediated intercellular transport); GO:0046739 (transport of virus in multicellular host) |
| KEGG | - |
| Pfam | PF01657 (Stress-antifung) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010962 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057794660.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057794660.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794660.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794660.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794660.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60200958 |
T |
TG |
1bp_insertion | stop_gained,frameshift_variant | 6 | B138,B22,B29,B41,B51,C30 |
Chr1:60200980 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | B126,B63,C43 |
Chr1:60200980 |
C |
CA |
1bp_insertion | CDS_variant | 3 | B126,B63,C43 |
Chr1:60200983 |
A |
AT |
1bp_insertion | frameshift_variant | 24 | A13,A22,B12,B125,B132,B15,B16,B23,B49,B50,B51,B57,B67,B77,B81,B88,B90,B92,C11,C12,C14,C69,C77,D3 |
Chr1:60200985 |
C |
CCT |
2bp_insertion | frameshift_variant | 124 | A1,A11,A15,A18,A19,A20,A24,A25,A5,A6,A7,A8,A9,B10,B100,B101,B106,B107,B108,B109,B111,B115,B117,B121,B123,B126,B127,B128,B129,B13,B130,B136,B138,B18,B2,B20,B22,B24,B26,B28,B29,B3,B30,B31,B33,B34,B37,B38,B39,B40,B42,B43,B5,B53,B54,B55,B58,B60,B61,B63,B64,B66,B70,B75,B76,B79,B82,B83,B86,B89,B9,B93,B95,B97,B98,B99,C1,C10,C13,C16,C18,C2,C22,C23,C25,C27,C3,C31,C35,C36,C37,C39,C4,C41,C42,C44,C45,C47,C49,C5,C50,C51,C54,C59,C6,C61,C64,C66,C67,C70,C71,C74,C78,C8,C82,C84,C85,C9,D1,D11,D2,D5,D8,D9 |
Chr1:60200991 |
TC |
T |
1bp_deletion | frameshift_variant | 10 | B10,B101,B108,B23,B31,B34,B93,C39,D2,D3 |
Chr1:60201064 |
TC |
T |
1bp_deletion | frameshift_variant | 45 | A2,A20,A23,A25,B1,B102,B109,B11,B117,B126,B13,B130,B133,B138,B140,B29,B36,B4,B41,B45,B51,B54,B63,B69,B73,B77,B78,B79,B8,B82,B87,C14,C22,C30,C33,C38,C43,C58,C60,C62,C67,C7,C72,C75,D7 |
Chr1:60201130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr1:60201172 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C1 |
Chr1:60201172 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C1 |
Chr1:60201185 |
CG |
C |
1bp_deletion | frameshift_variant | 6 | B138,B22,B29,B41,B51,C30 |
Chr1:60201199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B63,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794660.1PF01657
Stress-antifung 33-125 aa
PF01657
Stress-antifung 168-224 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794660.1 |
Pfam | PF01657 |
Stress-antifung | Family | 33 | 125 | 2.1e-25 | 89.9 | Salt stress response/antifungal |
XP_057794660.1 |
Pfam | PF01657 |
Stress-antifung | Family | 168 | 224 | 2.1e-25 | 89.9 | Salt stress response/antifungal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。