Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004188`

染色体: Chr01 坐标: 60307232-60320496 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004188`
名称	SmilChr01G004188
描述	myosin-6-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60307232 - 60320496 / `+`

ID 对照

NCBI Gene ID	`LOC131000186`
GeneID	`131000186`
locus_tag	`-`
NCBI Name	`LOC131000186`
原始查询	`SmilChr01G004188`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	myosin-6-like
产物	myosin-6-like
Arabidopsis	`AT5G43900` (MYA2) myosin 2 [Source:NCBI gene (formerly Entrezgene);Acc:834412] identity=75.2; qcov=1; evalue=0; confidence=high
Rice	`Os02g0816900` (OSMYOXIB) - identity=74; qcov=1; evalue=0; confidence=high
GO	GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL); PF02736 (Myosin_N)
InterPro	-
eggNOG	-
NR	GeneID:131000186

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057781954.1`
2	Cell membrane	细胞膜	0.60000	`XP_057781954.1`
3	Clathrin-coated vesicle	Clathrin-coated vesicle	0.20000	`XP_057781954.1`
4	Phragmoplast	Phragmoplast	0.20000	`XP_057781954.1`
5	Nucleus	细胞核	0.00000	`XP_057781954.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60308698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B12,B49,C44
`Chr1:60309113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr1:60309353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr1:60309583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B105,B112,B75
`Chr1:60310329`	`GA`	`G`	1bp_deletion	frameshift_variant	37	A11,A18,A24,A4,B10,B112,B12,B127,B128,B133,B23,B27,B33,B52,B55,B57,B64,B65,B73,B9,B91,B95,C14,C2,C29,C32,C34,C41,C42,C50,C66,C68,C70,C8,C9,D11,D6
`Chr1:60310338`	`CTA`	`C`	2bp_deletion	frameshift_variant	4	B112,C21,C81,C9
`Chr1:60310338`	`CTA`	`C`	2bp_deletion	CDS_variant	4	B112,C21,C81,C9
`Chr1:60310345`	`CT`	`C`	1bp_deletion	frameshift_variant	40	A10,A11,A18,A24,A4,B10,B106,B12,B127,B128,B133,B2,B23,B27,B33,B52,B55,B64,B65,B73,B9,B91,B92,B95,C14,C16,C2,C29,C32,C34,C41,C42,C50,C54,C66,C68,C70,C8,D11,D6
`Chr1:60310405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,D11
`Chr1:60310576`	`AG`	`A`	1bp_deletion	frameshift_variant	161	A1,A10,A11,A13,A14,A18,A20,A23,A24,A3,A4,A7,A9,B1,B10,B101,B102,B103,B104,B105,B106,B109,B113,B117,B12,B120,B121,B123,B124,B125,B127,B128,B129,B13,B130,B131,B133,B134,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B3,B33,B36,B37,B38,B39,B4,B41,B44,B47,B5,B51,B52,B55,B57,B59,B6,B61,B62,B64,B65,B66,B67,B69,B7,B72,B73,B76,B78,B79,B8,B81,B83,B84,B85,B9,B90,B91,B92,B93,B95,B97,B98,C12,C14,C16,C17,C2,C20,C21,C23,C24,C25,C26,C27,C28,C3,C30,C31,C32,C34,C35,C36,C37,C4,C41,C42,C43,C46,C47,C50,C51,C52,C53,C54,C56,C57,C58,C59,C6,C60,C61,C62,C64,C65,C66,C67,C68,C7,C70,C72,C73,C74,C76,C77,C78,C8,C81,C86,D11,D2,D3,D4,D6
`Chr1:60310639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B13
`Chr1:60310647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B105,B112,B18,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781954.1

1509 aa

754

1509

Myosin_N

Myosin_head

DIL

PF02736 Myosin_N 5-55 aa PF00063 Myosin_head 64-720 aa PF00612 IQ 737-755 aa PF00612 IQ 759-778 aa PF00612 IQ 786-804 aa PF00612 IQ 832-851 aa PF00612 IQ 856-875 aa PF01843 DIL 1331-1435 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781954.1`	Pfam	`PF02736`	Myosin_N	Domain	5	55	1.8e-10	41.0	Myosin N-terminal SH3-like domain
`XP_057781954.1`	Pfam	`PF00063`	Myosin_head	Domain	64	720	3.5e-250	832.6	Myosin head (motor domain)
`XP_057781954.1`	Pfam	`PF00612`	IQ	Motif	737	755	8.1e-24	81.8	IQ calmodulin-binding motif
`XP_057781954.1`	Pfam	`PF00612`	IQ	Motif	759	778	8.1e-24	81.8	IQ calmodulin-binding motif
`XP_057781954.1`	Pfam	`PF00612`	IQ	Motif	786	804	8.1e-24	81.8	IQ calmodulin-binding motif
`XP_057781954.1`	Pfam	`PF00612`	IQ	Motif	832	851	8.1e-24	81.8	IQ calmodulin-binding motif
`XP_057781954.1`	Pfam	`PF00612`	IQ	Motif	856	875	8.1e-24	81.8	IQ calmodulin-binding motif
`XP_057781954.1`	Pfam	`PF01843`	DIL	Repeat	1331	1435	2.4e-28	99.1	DIL domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925971.1
TCTATTTATTTATTTCTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTTCGTTCATATTCAAAGCTGAACGCCTGTTCCGATTTTTCCACTTTTCATTTGAAAAATCGGAGCGGTGATTAAACAAAGCTCATTTTGCTGTCAGATCTTAGTTTTTTCTTCCATTAATATTTTTTTGTTGGAATATGTGAAGGAATTGAAGAACTTGTGCATAAGATTATAGCGATATTTTGTTGGAGACAGTTTGTAGATTGAAG...

CDS

1 records

下载 CDS FASTA

LOC131000186
ATGGTTGCCTCAGCTGCTACAGGAGTTGGCTCTCTTGTTTGGGTGGAGGATCCTAATGAAGCCTGGATAGATGGAGAAGTTGTTGCAGTCAATGGTGAAGACATCACAATCCTTTGTACATCAGGGAACACGGTTGTTGTTAGGTCTTCCAATGTCTATCCCAAGGATGCTGATGCTCCATCTTGTGGGGTGGATGATATGACAAAGTTGGCATATTTACATGAACCTGGAGTTCTACAGAATTTAAAATCTAGATATGA...

Protein

1 records

下载 Protein FASTA

XP_057781954.1
MVASAATGVGSLVWVEDPNEAWIDGEVVAVNGEDITILCTSGNTVVVRSSNVYPKDADAPSCGVDDMTKLAYLHEPGVLQNLKSRYDINEIYTYTGSILIAVNPFQRLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMMNDGKSQAILVSGESGAGKTESTKLLMRYLAFMGGRSAGEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDQRGRISGAAVRTYLLERSRVCQLSDPERNYHCFYML...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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