当前解析结果
SmilChr01G004189| 统一新 Gene ID | SmilChr01G004189 |
|---|---|
| 名称 | SmilChr01G004189 |
| 描述 | probable indole-3-pyruvate monooxygenase YUCCA3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60343224 - 60344979 / + |
| NCBI Gene ID | LOC131000195 |
|---|---|
| GeneID | 131000195 |
| locus_tag | - |
| NCBI Name | LOC131000195 |
| 原始查询 | SmilChr01G004189 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable indole-3-pyruvate monooxygenase YUCCA3 |
| 产物 | probable indole-3-pyruvate monooxygenase YUCCA3 |
| Arabidopsis | AT1G04610 (YUC3)YUCCA 3 [Source:NCBI gene (formerly Entrezgene);Acc:839474] identity=69.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0128900 (YUCCA7)- identity=66.4; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0009851 (auxin biosynthetic process); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding) |
| KEGG | smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00743 (FMO-like); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000195 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057781965.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.60000 | XP_057781965.1 |
| 3 | Lipid droplet | 脂滴 | 0.60000 | XP_057781965.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057781965.1 |
| 5 | Cytoplasm | 细胞质 | 0.20000 | XP_057781965.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60343435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B49,B51,C44 |
Chr1:60343478 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:60343492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B26,C19,C52 |
Chr1:60343726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B105,B112,B75 |
Chr1:60343741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr1:60343759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr1:60343914 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B6,B65 |
Chr1:60343972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C51,C67 |
Chr1:60343984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B112,B75 |
Chr1:60344243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr1:60344453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B12,B49,B51 |
Chr1:60344502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781965.1PF13738
Pyr_redox_3 21-212 aa
PF07992
Pyr_redox_2 21-219 aa
PF13450
NAD_binding_8 22-60 aa
PF00743
FMO-like 22-338 aa
PF13434
Lys_Orn_oxgnase 86-208 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781965.1 |
Pfam | PF13738 |
Pyr_redox_3 | Family | 21 | 212 | 2.9e-30 | 106.3 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057781965.1 |
Pfam | PF07992 |
Pyr_redox_2 | Domain | 21 | 219 | 5.7e-16 | 59.5 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057781965.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 22 | 60 | 2.4e-05 | 25.2 | NAD(P)-binding Rossmann-like domain |
XP_057781965.1 |
Pfam | PF00743 |
FMO-like | Family | 22 | 338 | 1.7e-30 | 106.7 | Flavin-binding monooxygenase-like |
XP_057781965.1 |
Pfam | PF13434 |
Lys_Orn_oxgnase | Family | 86 | 208 | 3.3e-14 | 53.5 | L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。