Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004193`

染色体: Chr01 坐标: 60382938-60386414 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004193`
名称	SmilChr01G004193
描述	adenylyl-sulfate kinase 3-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60382938 - 60386414 / `+`

ID 对照

NCBI Gene ID	`LOC131000267`
GeneID	`131000267`
locus_tag	`-`
NCBI Name	`LOC131000267`
原始查询	`SmilChr01G004193`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	adenylyl-sulfate kinase 3-like
产物	adenylyl-sulfate kinase 3-like
Arabidopsis	`AT3G03900` (APK3) adenosine-5'-phosphosulfate (APS) kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:821077] identity=79.1; qcov=0.963; evalue=6.89e-124; confidence=high
Rice	`Os07g0573100` - identity=79; qcov=0.958; evalue=7.12e-121; confidence=high
GO	GO:0000103 (sulfate assimilation); GO:0004020 (adenylylsulfate kinase activity); GO:0005524 (ATP binding)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage))
Pfam	PF01583 (APS_kinase)
InterPro	-
eggNOG	-
NR	GeneID:131000267

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057782066.1`
2	Cytoplasm	细胞质	1.00000	`XP_057782090.1`
3	Nucleus	细胞核	0.60000	`XP_057782090.1`
4	Nucleoplasm	核质	0.20000	`XP_057782066.1`
5	Chromosome	染色体	0.00000	`XP_057782082.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60383265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr1:60383268`	`T`	`TTC`	2bp_insertion	frameshift_variant	23	A23,A8,B102,B11,B13,B140,B36,B38,B39,B41,B45,B6,B63,B69,B70,B8,B82,B83,C26,C28,C40,C7,C72
`Chr1:60383796`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B105,B112,B75
`Chr1:60384193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr1:60385574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B121,B60,B98,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782066.1

234 aa

117

234

APS_kinase

PF01583 APS_kinase 49-197 aa

XP_057782074.1

234 aa

117

234

APS_kinase

PF01583 APS_kinase 49-197 aa

XP_057782082.1

231 aa

116

231

APS_kinase

PF01583 APS_kinase 49-194 aa

XP_057782090.1

214 aa

107

214

APS_kinase

PF01583 APS_kinase 29-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782066.1`	Pfam	`PF01583`	APS_kinase	Domain	49	197	4.1e-68	228.9	Adenylylsulphate kinase
`XP_057782074.1`	Pfam	`PF01583`	APS_kinase	Domain	49	197	4.1e-68	228.9	Adenylylsulphate kinase
`XP_057782082.1`	Pfam	`PF01583`	APS_kinase	Domain	49	194	3.3e-63	213.0	Adenylylsulphate kinase
`XP_057782090.1`	Pfam	`PF01583`	APS_kinase	Domain	29	177	3.2e-68	229.3	Adenylylsulphate kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009093704.1
CTTCTTCAAGGTTTCCTGCATCTTTACTATCGATTATGTTCATCCTGCTTCTAAGCTTTCTGCATCTCTCAATCATGTTGGGGAAGAATGAATGCGGCTTCTCTCTCTCGATGTTTGCCCTACTTGGATAAAGGAGTATTTTTTCTAATGTCTACTGTGGGAAACTCAACTAATATTTTCTGGCACGAATGCCCTGTCGGGAAGGCTGACAGGCAAAAAATGCTTAATCAACAGGGATGCATTGTATGGATTACCGGTTT...

XR_009093703.1
CTTCTTCAAGGTTTCCTGCATCTTTACTATCGATTATGTTCATCCTGCTTCTAAGCTTTCTGCATCTCTCAATCATGTTGGGGAAGAATGAATGCGGCTTCTCTCTCTCGATGTTTGCCCTACTTGGATAAAGGAGTATTTTTTCTAATGTCTACTGTGGGAAACTCAACTAATATTTTCTGGCACGAATGCCCTGTCGGGAAGGCTGACAGGCAAAAAATGCTTAATCAACAGGGATGCATTGTATGGATTACCGGTTT...

CDS

4 records

下载 CDS FASTA

LOC131000267
ATGAATGCGGCTTCTCTCTCTCGATGTTTGCCCTACTTGGATAAAGGAGTATTTTTTCTAATGTCTACTGTGGGAAACTCAACTAATATTTTCTGGCACGAATGCCCTGTCGGGAAGGCTGACAGGCAAAAAATGCTTAATCAACAGGGATGCATTGTATGGATTACCGGTTTGAGTGGATCAGGTAAAAGCACCCTAGCATGCTCACTGGGTAGAACATTGCACTCTCGGGGGAAACTTTCATATGTTCTTGATGGGGA...

Protein

4 records

下载 Protein FASTA

XP_057782066.1
MNAASLSRCLPYLDKGVFFLMSTVGNSTNIFWHECPVGKADRQKMLNQQGCIVWITGLSGSGKSTLACSLGRTLHSRGKLSYVLDGDNLRHGLNKNLGFSPEDRTENIRRVGEVAKLFADAGLICIASLISPYCKDRDACRALLPEQFIEVFLNMPLELCEGRDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEITQKDGMCPTPSEMAGQVVSYLEDKGYLEAPVSMKIVE

XP_057782074.1
MNAASLSRCLPYLDKGVFFLMSTVGNSTNIFWHECPVGKADRQKMLNQQGCIVWITGLSGSGKSTLACSLGRTLHSRGKLSYVLDGDNLRHGLNKNLGFSPEDRTENIRRVGEVAKLFADAGLICIASLISPYCKDRDACRALLPEQFIEVFLNMPLELCEGRDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEITQKDGMCPTPSEMAGQVVSYLEDKGYLEAPVSMKIVE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器