Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004196`

染色体: Chr01 坐标: 60417503-60433614 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004196`
名称	SmilChr01G004196
描述	polycomb group protein EMBRYONIC FLOWER 2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60417503 - 60433614 / `+`

ID 对照

NCBI Gene ID	`LOC131000321`
GeneID	`131000321`
locus_tag	`-`
NCBI Name	`LOC131000321`
原始查询	`SmilChr01G004196`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polycomb group protein EMBRYONIC FLOWER 2
产物	polycomb group protein EMBRYONIC FLOWER 2
Arabidopsis	`AT5G51230` (EMF2) VEFS-Box of polycomb protein [Source:NCBI gene (formerly Entrezgene);Acc:835198] identity=60.6; qcov=0.995; evalue=0; confidence=high
Rice	`Os09g0306800` (OsEMF2b) - identity=55.9; qcov=0.938; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0031490 (chromatin DNA binding)
KEGG	smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage))
Pfam	PF09733 (VEFS-Box); PF23320 (Zn_SUZ12); PF24663 (DUF7651)
InterPro	-
eggNOG	-
NR	GeneID:131000321

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782161.1`
2	Nucleoplasm	核质	1.00000	`XP_057782161.1`
3	Nuclear body	核内小体	0.60000	`XP_057782161.1`
4	Chromosome	染色体	0.40000	`XP_057782161.1`
5	Centromere	着丝粒	0.00000	`XP_057782161.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60418895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:60419933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr1:60420700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr1:60420920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr1:60421093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,A25,B10,C27,C49
`Chr1:60424051`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:60425216`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C77
`Chr1:60425375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B93,C23
`Chr1:60425381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:60425456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B93,C2,C23
`Chr1:60429124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B70,C41,C47,C52
`Chr1:60429589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782161.1

649 aa

324

649

DUF7651

Zn_SUZ12

VEFS-Box

PF24663 DUF7651 77-277 aa PF23320 Zn_SUZ12 305-373 aa PF09733 VEFS-Box 496-616 aa

XP_057782170.1

646 aa

323

646

DUF7651

Zn_SUZ12

VEFS-Box

PF24663 DUF7651 77-277 aa PF23320 Zn_SUZ12 305-373 aa PF09733 VEFS-Box 493-613 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782161.1`	Pfam	`PF24663`	DUF7651	Domain	77	277	9.9e-86	287.2	Domain of unknown function (DUF7651)
`XP_057782161.1`	Pfam	`PF23320`	Zn_SUZ12	Domain	305	373	1.2e-33	115.4	Polycomb protein SUZ12-like, Zn domain
`XP_057782161.1`	Pfam	`PF09733`	VEFS-Box	Family	496	616	2.6e-56	189.7	VEFS-Box of polycomb protein
`XP_057782170.1`	Pfam	`PF24663`	DUF7651	Domain	77	277	9.8e-86	287.2	Domain of unknown function (DUF7651)
`XP_057782170.1`	Pfam	`PF23320`	Zn_SUZ12	Domain	305	373	1.2e-33	115.4	Polycomb protein SUZ12-like, Zn domain
`XP_057782170.1`	Pfam	`PF09733`	VEFS-Box	Family	493	613	2.6e-56	189.7	VEFS-Box of polycomb protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926178.1
AGAAATATGTGCGGCTAAACGTCCATATAAGACTACATTATTTAATTATCTTACCGCACGCAAACACTATGATGAAATAATGTACATATGCGGATGGTAGTCCAGTATAGTTGGTCGAGCATTAATTAATTCATTCAAATCTTGTTACGCTCTTTAGTTCTTTATACTTTTCTAATAAGCCCTAATTCCCAAAATTCGAACTCCAATTTCACCCTATTTCCACCATCCTTTCTCCATTGAAGGTTACGAGCTACCGAGCC...

XM_057926187.1
AGAAATATGTGCGGCTAAACGTCCATATAAGACTACATTATTTAATTATCTTACCGCACGCAAACACTATGATGAAATAATGTACATATGCGGATGGTAGTCCAGTATAGTTGGTCGAGCATTAATTAATTCATTCAAATCTTGTTACGCTCTTTAGTTCTTTATACTTTTCTAATAAGCCCTAATTCCCAAAATTCGAACTCCAATTTCACCCTATTTCCACCATCCTTTCTCCATTGAAGGTTACGAGCTACCGAGCC...

CDS

2 records

下载 CDS FASTA

LOC131000321
ATGCCGGGCATACCTCTCGTGGCTCGTGAAACTGCGAATTGTGTTTGCAATTGCAGTTACTCCCGAGGTGCAGACCATATGTGTCGCCAAGATCCCCGTGCGCATTTGTCTCCAGAAGAGCAAATTGCAGCCGAGGAAAGCCTCTCAATTTACTGCAAGCCTGTTGAATTGTACAACATTCTTCAGCGCCGTGCTGTTAGAAATCCATCCTTCCTTCAGCGATGTTTGCGGTACAAAATACATGCAAAACACAAGAAAAG...

Protein

2 records

下载 Protein FASTA

XP_057782161.1
MPGIPLVARETANCVCNCSYSRGADHMCRQDPRAHLSPEEQIAAEESLSIYCKPVELYNILQRRAVRNPSFLQRCLRYKIHAKHKKRIQMTISLPSTVNDESQIQSLFPLCIMLARPVYSPAVVEDSAVYRFSRECILTKCTGDDAMNQDEANFILPEINKLSAEVKSGSLTILFVSCAELFKEHLDAPLFPANVGGHCFLGKIPMELLHLSWEKSLNLSSGERAEMLSTVDLHSCFLKTGSFGEDKCFSFHSPHAAGAM...

XP_057782170.1
MPGIPLVARETANCVCNCSYSRGADHMCRQDPRAHLSPEEQIAAEESLSIYCKPVELYNILQRRAVRNPSFLQRCLRYKIHAKHKKRIQMTISLPSTVNDESQIQSLFPLCIMLARPVYSPAVVEDSAVYRFSRECILTKCTGDDAMNQDEANFILPEINKLSAEVKSGSLTILFVSCAELFKEHLDAPLFPANVGGHCFLGKIPMELLHLSWEKSLNLSSGERAEMLSTVDLHSCFLKTGSFGEDKCFSFHSPHAAGAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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