当前解析结果
SmilChr01G004217| 统一新 Gene ID | SmilChr01G004217 |
|---|---|
| 名称 | SmilChr01G004217 |
| 描述 | E3 ubiquitin-protein ligase SINAT2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60565055 - 60568665 / - |
| NCBI Gene ID | LOC131000494 |
|---|---|
| GeneID | 131000494 |
| locus_tag | - |
| NCBI Name | LOC131000494 |
| 原始查询 | SmilChr01G004217 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase SINAT2-like |
| 产物 | E3 ubiquitin-protein ligase SINAT2-like |
| Arabidopsis | AT3G58040 (SINAT2)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824973] identity=73.9; qcov=1.02; evalue=2.27e-174; confidence=high |
| Rice | Os02g0128800 (OsRFPHC-9)- identity=65; qcov=1.02; evalue=5.07e-150; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0007275 (multicellular organism development); GO:0008270 (zinc ion binding); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03145 (Sina_TRAF); PF21361 (Sina_ZnF); PF21362 (Sina_RING) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000494 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057782404.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057782404.1 |
| 3 | Autophagic vesicle | Autophagic vesicle | 0.60000 | XP_057782404.1 |
| 4 | Autophagosome | Autophagosome | 0.60000 | XP_057782404.1 |
| 5 | Nucleus | 细胞核 | 0.40000 | XP_057782404.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60565281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B102,B20,B83 |
Chr1:60565299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr1:60565324 |
G |
A |
EMS_canonical_SNV | stop_gained | 97 | A1,A10,A11,A16,A2,A20,A21,A23,A6,A7,A8,A9,B100,B101,B102,B104,B105,B108,B110,B113,B115,B117,B118,B122,B124,B127,B129,B13,B131,B132,B134,B136,B14,B18,B20,B22,B24,B25,B27,B3,B32,B35,B36,B47,B50,B51,B52,B54,B55,B58,B7,B70,B76,B77,B79,B83,B87,B90,B93,B94,B96,B98,C1,C10,C11,C14,C16,C19,C23,C26,C3,C30,C4,C40,C47,C49,C50,C54,C55,C57,C62,C67,C69,C70,C71,C74,C77,C78,C8,C81,C82,C86,C87,C9,D11,D5,D8 |
Chr1:60565372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,B55 |
Chr1:60565383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B93 |
Chr1:60565423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,C49 |
Chr1:60565487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr1:60565516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C50 |
Chr1:60565547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:60565941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B11,B69,C3,C50 |
Chr1:60565989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782404.1PF21362
Sina_RING 54-88 aa
PF21361
Sina_ZnF 102-177 aa
PF03145
Sina_TRAF 197-294 aa
XP_057782413.1PF21362
Sina_RING 54-88 aa
PF21361
Sina_ZnF 102-177 aa
PF03145
Sina_TRAF 197-294 aa
XP_057782422.1PF21362
Sina_RING 54-88 aa
PF21361
Sina_ZnF 102-177 aa
PF03145
Sina_TRAF 197-294 aa
XP_057782430.1PF21362
Sina_RING 54-88 aa
PF21361
Sina_ZnF 102-177 aa
PF03145
Sina_TRAF 197-294 aa
XP_057782439.1PF21362
Sina_RING 54-88 aa
PF21361
Sina_ZnF 102-177 aa
PF03145
Sina_TRAF 197-294 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782404.1 |
Pfam | PF21362 |
Sina_RING | Domain | 54 | 88 | 2.6e-11 | 44.2 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057782404.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 102 | 177 | 1.2e-28 | 100.0 | Sina, zinc finger |
XP_057782404.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 197 | 294 | 3.5e-32 | 111.5 | Sina, TRAF-like domain |
XP_057782413.1 |
Pfam | PF21362 |
Sina_RING | Domain | 54 | 88 | 2.6e-11 | 44.2 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057782413.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 102 | 177 | 1.2e-28 | 100.0 | Sina, zinc finger |
XP_057782413.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 197 | 294 | 3.5e-32 | 111.5 | Sina, TRAF-like domain |
XP_057782422.1 |
Pfam | PF21362 |
Sina_RING | Domain | 54 | 88 | 2.6e-11 | 44.2 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057782422.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 102 | 177 | 1.2e-28 | 100.0 | Sina, zinc finger |
XP_057782422.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 197 | 294 | 3.5e-32 | 111.5 | Sina, TRAF-like domain |
XP_057782430.1 |
Pfam | PF21362 |
Sina_RING | Domain | 54 | 88 | 2.6e-11 | 44.2 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057782430.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 102 | 177 | 1.2e-28 | 100.0 | Sina, zinc finger |
XP_057782430.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 197 | 294 | 3.5e-32 | 111.5 | Sina, TRAF-like domain |
XP_057782439.1 |
Pfam | PF21362 |
Sina_RING | Domain | 54 | 88 | 2.6e-11 | 44.2 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057782439.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 102 | 177 | 1.2e-28 | 100.0 | Sina, zinc finger |
XP_057782439.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 197 | 294 | 3.5e-32 | 111.5 | Sina, TRAF-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。