Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004219`

染色体: Chr01 坐标: 60576167-60578279 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004219`
名称	SmilChr01G004219
描述	DNA-3-methyladenine glycosylase
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60576167 - 60578279 / `-`

ID 对照

NCBI Gene ID	`LOC131000522`
GeneID	`131000522`
locus_tag	`-`
NCBI Name	`LOC131000522`
原始查询	`SmilChr01G004219`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-3-methyladenine glycosylase
产物	DNA-3-methyladenine glycosylase
Arabidopsis	`AT3G12040` (AT3G12040) DNA-3-methyladenine glycosylase (MAG) [Source:NCBI gene (formerly Entrezgene);Acc:820378] identity=67.2; qcov=0.859; evalue=2.94e-115; confidence=high
Rice	`Os02g0774500` (TagI) - identity=76.9; qcov=0.751; evalue=8.87e-117; confidence=high
GO	GO:0003677 (DNA binding); GO:0003905 (alkylbase DNA N-glycosylase activity); GO:0006284 (base-excision repair)
KEGG	smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF02245 (Pur_DNA_glyco)
InterPro	-
eggNOG	-
NR	GeneID:131000522

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782464.1`
2	Nucleolus	核仁	0.60000	`XP_057782464.1`
3	Chromosome	染色体	0.00000	`XP_057782464.1`
4	Centromere	着丝粒	0.00000	`XP_057782464.1`
5	Chromatin	染色质	0.00000	`XP_057782464.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60576876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B121,B42,B43,C16,C85
`Chr1:60577184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr1:60577201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B3,C17,C25,C83
`Chr1:60577883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:60578075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr1:60578171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782464.1

283 aa

142

283

Pur_DNA_glyco

PF02245 Pur_DNA_glyco 93-271 aa

XP_057782473.1

277 aa

138

277

Pur_DNA_glyco

PF02245 Pur_DNA_glyco 93-265 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782464.1`	Pfam	`PF02245`	Pur_DNA_glyco	Domain	93	271	2.9e-53	180.6	Methylpurine-DNA glycosylase (MPG)
`XP_057782473.1`	Pfam	`PF02245`	Pur_DNA_glyco	Domain	93	265	8.1e-51	172.6	Methylpurine-DNA glycosylase (MPG)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926481.1
AGTATATATGCATTAATAAAAATTAAAAATTCAACAAGAAAAGACCTTCCATTCCCTATGCTTCTCCTTTCGACCAAAATTCAGCTCCGCTTCTTTGAGAAATCTAATCATCTTTCATCCCAAATGAACAAGAAGCAAACGGTTCAAAGCCCCAGTAAAGTAGTCAGAACTATACGGAAATCTACCCGCCCCAGAGCCATTGCACTCGACTCGGAAACGAAACGAAAATCAAGAGCGAAGCCCAACCCCCATTATCAACA...

XM_057926490.1
TTAATAAAAATTAAAAATTCAACAAGAAAAGACCTTCCATTCCCTATGCTTCTCCTTTCGACCAAAATTCAGCTCCGCTTCTTTGAGAAATCTAATCATCTTTCATCCCAAATGAACAAGAAGCAAACGGTTCAAAGCCCCAGTAAAGTAGTCAGAACTATACGGAAATCTACCCGCCCCAGAGCCATTGCACTCGACTCGGAAACGAAACGAAAATCAAGAGCGAAGCCCAACCCCCATTATCAACAGGAGGAGGAAAT...

CDS

2 records

下载 CDS FASTA

LOC131000522
ATGCTTCTCCTTTCGACCAAAATTCAGCTCCGCTTCTTTGAGAAATCTAATCATCTTTCATCCCAAATGAACAAGAAGCAAACGGTTCAAAGCCCCAGTAAAGTAGTCAGAACTATACGGAAATCTACCCGCCCCAGAGCCATTGCACTCGACTCGGAAACGAAACGAAAATCAAGAGCGAAGCCCAACCCCCATTATCAACAGGAGGAGGAAATACGGCCTATAACATCCATTTCTTCGATTTTCTTGGAAAAAAATCC...

Protein

2 records

下载 Protein FASTA

XP_057782464.1
MLLLSTKIQLRFFEKSNHLSSQMNKKQTVQSPSKVVRTIRKSTRPRAIALDSETKRKSRAKPNPHYQQEEEIRPITSISSIFLEKNPILSPNFYQIDALDLAPRLLGKHLKKDDVVLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGHAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLETVQQRRGLKSEKPVLLAGPGKVGQALGISTEWSNHPLFSPGGLELLDGPEPEKILVGPRVGIEYASPEHVT...

XP_057782473.1
MLLLSTKIQLRFFEKSNHLSSQMNKKQTVQSPSKVVRTIRKSTRPRAIALDSETKRKSRAKPNPHYQQEEEIRPITSISSIFLEKNPILSPNFYQIDALDLAPRLLGKHLKKDDVVLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGHAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLETVQQRRGLKSEKPVLLAGPGKVGQALGISTEWSNHPLFSPDGPEPEKILVGPRVGIEYASPEHVTALWRFA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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