当前解析结果
SmilChr01G004220| 统一新 Gene ID | SmilChr01G004220 |
|---|---|
| 名称 | SmilChr01G004220 |
| 描述 | uncharacterized SmilChr01G004220 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60578752 - 60580941 / + |
| NCBI Gene ID | LOC131000532 |
|---|---|
| GeneID | 131000532 |
| locus_tag | - |
| NCBI Name | LOC131000532 |
| 原始查询 | SmilChr01G004220 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Aha1 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820379]; symbol=AT3G12050; hit=AT3G12050; species=arabidopsis; confidence=high |
| 产物 | Aha1 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820379]; symbol=AT3G12050; hit=AT3G12050; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G12050 (AT3G12050)Aha1 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820379] identity=67.9; qcov=1.03; evalue=1.18e-180; confidence=high |
| Rice | Os08g0464000- identity=64.5; qcov=1.02; evalue=3.07e-167; confidence=high |
| GO | GO:0001671 (ATPase activator activity); GO:0005829 (cytosol); GO:0006457 (protein folding); GO:0032781 (positive regulation of ATP-dependent activity); GO:0051087 (protein-folding chaperone binding) |
| KEGG | - |
| Pfam | PF08327 (AHSA1); PF09229 (Aha1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000532 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057782483.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057782483.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057782483.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057782483.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782483.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60579006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,C59,C6 |
Chr1:60579144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B41 |
Chr1:60579294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C63,D9 |
Chr1:60579315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B42,B43,C16,C85 |
Chr1:60580585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:60580780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782483.1PF09229
Aha1_N 29-165 aa
PF08327
AHSA1 228-348 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782483.1 |
Pfam | PF09229 |
Aha1_N | Domain | 29 | 165 | 9.1e-29 | 101.1 | Activator of Hsp90 ATPase, N-terminal |
XP_057782483.1 |
Pfam | PF08327 |
AHSA1 | Family | 228 | 348 | 3e-15 | 57.3 | Activator of Hsp90 ATPase homolog 1-like protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。