当前解析结果
SmilChr01G004233| 统一新 Gene ID | SmilChr01G004233 |
|---|---|
| 名称 | SmilChr01G004233 |
| 描述 | L-type lectin-domain containing receptor kinase IX.1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60701894 - 60704134 / - |
| NCBI Gene ID | LOC131011056 |
|---|---|
| GeneID | 131011056 |
| locus_tag | - |
| NCBI Name | LOC131011056 |
| 原始查询 | SmilChr01G004233 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | L-type lectin-domain containing receptor kinase IX.1-like |
| 产物 | L-type lectin-domain containing receptor kinase IX.1-like |
| Arabidopsis | AT5G10530 (AT5G10530)Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830918] identity=45; qcov=1; evalue=5.86e-175; confidence=medium |
| Rice | Os07g0569550 (OJ1019_E02.19)- identity=48.3; qcov=1; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011056 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057794791.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794791.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794791.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794791.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794791.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60701950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B126,C6 |
Chr1:60702298 |
C |
CTG |
2bp_insertion | frameshift_variant | 14 | A9,B140,B15,B36,B45,B61,B8,C1,C17,C20,C55,C60,C77,C80 |
Chr1:60702299 |
AAC |
A |
2bp_deletion | frameshift_variant | 15 | A9,B134,B140,B15,B36,B45,B61,B8,C1,C17,C20,C55,C60,C77,C80 |
Chr1:60702326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,A22,B84,B99 |
Chr1:60702345 |
GA |
G |
1bp_deletion | frameshift_variant | 10 | A11,A2,A22,A23,B114,B60,B84,B99,C8,C9 |
Chr1:60702419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr1:60702453 |
ACT |
A |
2bp_deletion | frameshift_variant | 50 | A20,A21,A4,A5,A6,B101,B106,B112,B115,B120,B126,B140,B22,B29,B3,B32,B35,B38,B39,B45,B5,B50,B58,B59,B62,B70,B74,B76,B88,B95,C1,C14,C15,C18,C25,C28,C44,C46,C53,C55,C61,C70,C71,C72,C76,C77,C79,C84,C87,D8 |
Chr1:60702458 |
A |
ACG |
2bp_insertion | frameshift_variant | 49 | A20,A21,A4,A5,A6,B101,B106,B112,B115,B120,B126,B140,B22,B29,B3,B32,B35,B38,B39,B45,B5,B50,B58,B59,B62,B70,B74,B76,B88,B95,C1,C14,C15,C18,C25,C28,C44,C53,C55,C61,C70,C71,C72,C76,C77,C79,C84,C87,D8 |
Chr1:60702505 |
C |
CTT |
2bp_insertion | frameshift_variant | 4 | B103,B119,C15,C57 |
Chr1:60702505 |
C |
CTT |
2bp_insertion | CDS_variant | 4 | B103,B119,C15,C57 |
Chr1:60702511 |
CAA |
C |
2bp_deletion | frameshift_variant | 3 | B103,B119,C57 |
Chr1:60702511 |
CAA |
C |
2bp_deletion | CDS_variant | 3 | B103,B119,C57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794791.1PF00139
Lectin_legB 25-275 aa
PF00069
Pkinase 359-626 aa
PF07714
PK_Tyr_Ser-Thr 360-626 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794791.1 |
Pfam | PF00139 |
Lectin_legB | Domain | 25 | 275 | 1.7e-60 | 205.4 | Legume lectin domain |
XP_057794791.1 |
Pfam | PF00069 |
Pkinase | Domain | 359 | 626 | 3.7e-51 | 174.8 | Protein kinase domain |
XP_057794791.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 360 | 626 | 1.1e-45 | 156.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。