Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004240`

染色体: Chr01 坐标: 60715424-60718903 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004240`
名称	SmilChr01G004240
描述	metal tolerance protein C2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60715424 - 60718903 / `-`

ID 对照

NCBI Gene ID	`LOC131000597`
GeneID	`131000597`
locus_tag	`-`
NCBI Name	`LOC131000597`
原始查询	`SmilChr01G004240`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	metal tolerance protein C2
产物	metal tolerance protein C2
Arabidopsis	`AT3G12100` (AT3G12100) Cation efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:820384] identity=69.8; qcov=0.962; evalue=0; confidence=high
Rice	`Os02g0832700` (OsMTP5) - identity=74.1; qcov=0.487; evalue=1.2e-107; confidence=medium
GO	GO:0005385 (zinc ion transmembrane transporter activity); GO:0005794 (Golgi apparatus); GO:0006829 (zinc ion transport); GO:0006882 (intracellular zinc ion homeostasis); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF01545 (Cation_efflux)
InterPro	-
eggNOG	-
NR	GeneID:131000597

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	1.00000	`XP_057782600.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057782592.1`
3	Trans-golgi network	Trans-golgi network	0.80000	`XP_057782600.1`
4	Vacuole	液泡	0.60000	`XP_057782592.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057782600.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60715757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B83,C59
`Chr1:60715766`	`G`	`A`	EMS_canonical_SNV	stop_gained	68	A11,A15,A16,A18,A19,A2,A21,A22,A23,A3,A4,A7,B102,B103,B110,B111,B117,B125,B128,B130,B131,B135,B136,B16,B24,B28,B3,B32,B36,B38,B39,B41,B45,B48,B49,B5,B53,B57,B59,B6,B64,B8,B80,B82,B83,B87,B89,B94,B95,C10,C13,C28,C3,C30,C34,C35,C39,C41,C46,C61,C7,C71,C80,C86,C87,D2,D5,D9
`Chr1:60715778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B11,C79
`Chr1:60715949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C50
`Chr1:60716111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C50
`Chr1:60716114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C50
`Chr1:60716846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr1:60716853`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B13
`Chr1:60716853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:60716895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,C77,D1
`Chr1:60716906`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B70
`Chr1:60716906`	`AC`	`A`	1bp_deletion	CDS_variant	1	B70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782592.1

398 aa

199

398

Cation_efflux

PF01545 Cation_efflux 117-315 aa

XP_057782600.1

396 aa

198

396

Cation_efflux

PF01545 Cation_efflux 117-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782592.1`	Pfam	`PF01545`	Cation_efflux	Domain	117	315	1.3e-30	107.4	Cation efflux transmembrane domain
`XP_057782600.1`	Pfam	`PF01545`	Cation_efflux	Domain	117	315	1.4e-30	107.3	Cation efflux transmembrane domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926617.1
AAATCGTGGTTTATTCCGTTTACTTTGACTGAGGAGAAACCTCTGCAGTCTGCAGCTCCAAATTTTCAAGTTTTATGCGCGTATATCAGTATATGTATGTAATATTTGTGTGTGTTTGTTTTACAAAAGTTCGAGTTTTTTTTCTTGCATTTGCGATTAGAAATGGATAATCATTCGCAAACGAAGTACCAACACGCGGCGTTCGACGGCAGCAAGCTCGCCGATTCGCCGGGTTCGTACACCGGCGATTTCAGTTTCGC...

XM_057926609.1
AGGAGAAACCTCTGCAGTCTGCAGCTCCAAATTTTCAAGTTTTATGCGCGTATATCAGTATATGTATGTAATATTTGTGTGTGTTTGTTTTACAAAAGTTCGAGTTTTTTTTCTTGCATTTGCGATTAGAAATGGATAATCATTCGCAAACGAAGTACCAACACGCGGCGTTCGACGGCAGCAAGCTCGCCGATTCGCCGGGTTCGTACACCGGCGATTTCAGTTTCGCAAAGAGCACGGATCGGCGATTCGCCTACTTC...

CDS

2 records

下载 CDS FASTA

LOC131000597
ATGGATAATCATTCGCAAACGAAGTACCAACACGCGGCGTTCGACGGCAGCAAGCTCGCCGATTCGCCGGGTTCGTACACCGGCGATTTCAGTTTCGCAAAGAGCACGGATCGGCGATTCGCCTACTTCCGCCAAGCGTCTCTGCTGCGTCAGAACGCTGCCGTCGAGCCCCACACGCCGCATCATGAGCTGGCGCGCAGCGTTTCGAGCATTGATATTCCGCCGGGCAGTTATTTTCCGGATTATAGGTTTTCGAATTC...

Protein

2 records

下载 Protein FASTA

XP_057782592.1
MDNHSQTKYQHAAFDGSKLADSPGSYTGDFSFAKSTDRRFAYFRQASLLRQNAAVEPHTPHHELARSVSSIDIPPGSYFPDYRFSNSKGTGDGVSAFSFVSLILGGLRSGNKQMRRLFVLISLNVAYSTTELFVGLFSGRIGLVSDAFHLTFGCGLLSFSLFAMAASRQNPDRTYTYGYKRLEVLSAFTNALFLLFMSFSLAVEALHAFIQDESEHKHYLVISAVANLLVNLIGVWFFRNYARISIAYRKAEDMNYHSVC...

XP_057782600.1
MDNHSQTKYQHAAFDGSKLADSPGSYTGDFSFAKSTDRRFAYFRQASLLRQNAAVEPHTPHHELARSVSSIDIPPGSYFPDYRFSNSKGTGDGVSAFSFVSLILGGLRSGNKQMRRLFVLISLNVAYSTTELFVGLFSGRIGLVSDAFHLTFGCGLLSFSLFAMAASRQNPDRTYTYGYKRLEVLSAFTNALFLLFMSFSLAVEALHAFIQDESEHKHYLVISAVANLLVNLIGVWFFRNYARISIAYRKAEDMNYHSVC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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