Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004271`

染色体: Chr01 坐标: 60955056-60958746 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004271`
名称	SmilChr01G004271
描述	actin-7
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60955056 - 60958746 / `-`

ID 对照

NCBI Gene ID	`LOC131000843`
GeneID	`131000843`
locus_tag	`-`
NCBI Name	`LOC131000843`
原始查询	`SmilChr01G004271`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	actin-7
产物	actin-7
Arabidopsis	`AT5G09810` (ACT7) actin 7 [Source:NCBI gene (formerly Entrezgene);Acc:830841] identity=97.6; qcov=1; evalue=0; confidence=high
Rice	`Os05g0106600` - identity=96.5; qcov=1; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00022 (Actin)
InterPro	-
eggNOG	-
NR	GeneID:131000843

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	0.80000	`XP_057782948.1`
2	Cytosol	细胞质基质	0.60000	`XP_057782948.1`
3	Nucleus	细胞核	0.20000	`XP_057782948.1`
4	Cytoplasm	细胞质	0.20000	`XP_057782948.1`
5	Nucleoplasm	核质	0.20000	`XP_057782964.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60955658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:60955824`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C73
`Chr1:60955824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr1:60955948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B50
`Chr1:60956035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B50
`Chr1:60956152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr1:60956362`	`GTC`	`G`	2bp_deletion	frameshift_variant	1	C52
`Chr1:60956362`	`GTC`	`G`	2bp_deletion	CDS_variant	1	C52
`Chr1:60956390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr1:60956463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,B70,C85
`Chr1:60956469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,B70,C85
`Chr1:60956490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B49,B70,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782948.1

378 aa

189

378

Actin

PF00022 Actin 5-357 aa

XP_057782956.1

378 aa

189

378

Actin

PF00022 Actin 5-357 aa

XP_057782964.1

377 aa

188

377

Actin

PF00022 Actin 5-377 aa

XP_057782972.1

377 aa

188

377

Actin

PF00022 Actin 5-377 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782948.1`	Pfam	`PF00022`	Actin	Family	5	357	2.2e-133	445.5	Actin
`XP_057782956.1`	Pfam	`PF00022`	Actin	Family	5	357	2.2e-133	445.5	Actin
`XP_057782964.1`	Pfam	`PF00022`	Actin	Family	5	377	7.1e-147	490.0	Actin
`XP_057782972.1`	Pfam	`PF00022`	Actin	Family	5	377	7.1e-147	490.0	Actin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057926981.1
TCTACCCACCCTCACTATCAAAAGGAGAAATTTCAAGAGAGAGAAAAGGGTGTTCCAGATTTTGATTCTTTTGTTGGACGACTTTTTTGTGATTAGACGAGTCTACCCCTGTGATCTAGAAAAGATGAATTTCATCCGAGGCTGAGCTCCAAGCACTCGTTTTTAAAACAAAGAGGGCGGGCACTGGACACACAAGAGGCCAACAATTATCGTGAAGAGAGAGAGAGAGAGGGCGCAGGAGAGAGAAAGTCGCACCACAG...

XM_057926973.1
AAGGAGAAATTTCAAGAGAGAGAAAAGGGTGTTCCAGATTTTGATTCTTTTGTTGGACGACTTTTTTGTGATTAGACGAGTCTACCCCTGTGATCTAGAAAAGATGAATTTCATCCGAGGCTGAGCTCCAAGCACTCGTTTTTAAAACAAAGAGGGCGGGCACTGGACACACAAGAGGCCAACAATTATCGTGAAGAGAGAGAGAGAGAGGGCGCAGGAGAGAGAAAGTCGCACCACAGGAGGAGGAAAAGAGCAGGACG...

CDS

4 records

下载 CDS FASTA

LOC131000843
ATGGCAGAAGCTGAAGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCCGTCTTTCCCAGTATTGTGGGGCGCCCTCGTCACACTGGGGTGATGGTTGGGATGGGCCAAAAGGATGCCTATGTGGGTGACGAGGCTCAGTCCAAGAGAGGTATTTTGACACTGAAATATCCGATCGAGCATGGAATTGTCAGCAACTGGGATGATATGGAGAAGAT...

Protein

4 records

下载 Protein FASTA

XP_057782948.1
MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYIALDYEQELETAKTSSAVEKNYELPDGQVITIGAERFRCP...

XP_057782956.1
MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYIALDYEQELETAKTSSAVEKNYELPDGQVITIGAERFRCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器