Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004276`

染色体: Chr01 坐标: 60986629-60990713 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004276`
名称	SmilChr01G004276
描述	delta(12)-fatty-acid desaturase FAD2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60986629 - 60990713 / `-`

ID 对照

NCBI Gene ID	`LOC131000922`
GeneID	`131000922`
locus_tag	`-`
NCBI Name	`LOC131000922`
原始查询	`SmilChr01G004276`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	delta(12)-fatty-acid desaturase FAD2
产物	delta(12)-fatty-acid desaturase FAD2
Arabidopsis	`AT3G12120` (FAD2) fatty acid desaturase 2 [Source:NCBI gene (formerly Entrezgene);Acc:820387] identity=77.8; qcov=1; evalue=0; confidence=high
Rice	`Os02g0716500` (OsFAD2) - identity=70.6; qcov=1.02; evalue=0; confidence=high
GO	GO:0006629 (lipid metabolic process); GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water)
KEGG	smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00487 (FA_desaturase); PF11960 (DUF3474)
InterPro	-
eggNOG	-
NR	GeneID:131000922

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057783057.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057783057.1`
3	Nucleus	细胞核	0.00000	`XP_057783057.1`
4	Chromosome	染色体	0.00000	`XP_057783057.1`
5	Centromere	着丝粒	0.00000	`XP_057783057.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60986915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,C12,C54
`Chr1:60987009`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B103
`Chr1:60987009`	`TG`	`T`	1bp_deletion	CDS_variant	1	B103
`Chr1:60987220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:60987282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,A7,B128,B57,C41
`Chr1:60987294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:60987349`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B57
`Chr1:60987522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:60987587`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C44
`Chr1:60987587`	`CG`	`C`	1bp_deletion	CDS_variant	1	C44
`Chr1:60987781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B83,C25,C59
`Chr1:60987846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783057.1

383 aa

192

383

DUF3474

FA_desaturase

PF11960 DUF3474 25-62 aa PF00487 FA_desaturase 85-345 aa

XP_057783065.1

383 aa

192

383

DUF3474

FA_desaturase

PF11960 DUF3474 25-62 aa PF00487 FA_desaturase 85-345 aa

XP_057783074.1

383 aa

192

383

DUF3474

FA_desaturase

PF11960 DUF3474 25-62 aa PF00487 FA_desaturase 85-345 aa

XP_057783078.1

383 aa

192

383

DUF3474

FA_desaturase

PF11960 DUF3474 25-62 aa PF00487 FA_desaturase 85-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783057.1`	Pfam	`PF11960`	DUF3474	Family	25	62	8.3e-09	36.6	Domain of unknown function (DUF3474)
`XP_057783057.1`	Pfam	`PF00487`	FA_desaturase	Domain	85	345	1.3e-31	111.0	Fatty acid desaturase
`XP_057783065.1`	Pfam	`PF11960`	DUF3474	Family	25	62	8.3e-09	36.6	Domain of unknown function (DUF3474)
`XP_057783065.1`	Pfam	`PF00487`	FA_desaturase	Domain	85	345	1.3e-31	111.0	Fatty acid desaturase
`XP_057783074.1`	Pfam	`PF11960`	DUF3474	Family	25	62	8.3e-09	36.6	Domain of unknown function (DUF3474)
`XP_057783074.1`	Pfam	`PF00487`	FA_desaturase	Domain	85	345	1.3e-31	111.0	Fatty acid desaturase
`XP_057783078.1`	Pfam	`PF11960`	DUF3474	Family	25	62	8.3e-09	36.6	Domain of unknown function (DUF3474)
`XP_057783078.1`	Pfam	`PF00487`	FA_desaturase	Domain	85	345	1.3e-31	111.0	Fatty acid desaturase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057927074.1
GGGGCCCGCCCTTTTGGGGGGAGGGAAAAACCAAAAGCAATTTAAGTAGCGAGTGATGCCCATTGCTTTAGCACTCCCGTGAGCTCGCCTCTATTTATAACGCCTGTGGTGCCGGCCACTCTACTCCGCACCGCACCGCACCTCTTCCTTTCTCTCACTACCCCTCCTCCAAACAGGAGAGAGAAACCGCGCCTCCTCCTCTTAGGTCGCTGAACAATGGGTGCTGGAGGGCGTATGTCCGTACCCCCTGCCGATAAGAA...

XM_057927095.1
AAACCAAAAGCAATTTAAGTAGCGAGTGATGCCCATTGCTTTAGCACTCCCGTGAGCTCGCCTCTATTTATAACGCCTGTGGTGCCGGCCACTCTACTCCGCACCGCACCGCACCTCTTCCTTTCTCTCACTACCCCTCCTCCAAACAGGAGAGAGAAACCGCGCCTCCTCCTCTTAGGGGTCAAGTTGTCGCTGAACAATGGGTGCTGGAGGGCGTATGTCCGTACCCCCTGCCGATAAGAAGGCAAAATCCGACGTTG...

CDS

4 records

下载 CDS FASTA

LOC131000922
ATGGGTGCTGGAGGGCGTATGTCCGTACCCCCTGCCGATAAGAAGGCAAAATCCGACGTTGTCCAACGAGTTCCGCATGCAAAGCCTCCATTTACGCTCGGTGAGATCAAGAAAGCCATTCCACCCCATTGTTTCAAGCGTTCTATTCCTCGTTCATTTTCCTATGTCGTATATGACCTTGTCATTGCCGCTCTGTTTTACTATGTCGCCACAAACTACTTCCATCAGCTCCCGCAGCCTCTCTCCTACATAGCCTGGGC...

Protein

4 records

下载 Protein FASTA

XP_057783057.1
MGAGGRMSVPPADKKAKSDVVQRVPHAKPPFTLGEIKKAIPPHCFKRSIPRSFSYVVYDLVIAALFYYVATNYFHQLPQPLSYIAWALYVICQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSFLLVPYFSWKYSHRRHHSNTGSLEKDEVFVPKVKSGVSWSTKYLNNPPGRVITLFVQLTLGWPLYLMFNVSGRPYDRFACHFDPQSPIYSDRERAQIFLSDAGILAATYGLYRLCAAKGLAWVLCVYGGPLL...

XP_057783065.1
MGAGGRMSVPPADKKAKSDVVQRVPHAKPPFTLGEIKKAIPPHCFKRSIPRSFSYVVYDLVIAALFYYVATNYFHQLPQPLSYIAWALYVICQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSFLLVPYFSWKYSHRRHHSNTGSLEKDEVFVPKVKSGVSWSTKYLNNPPGRVITLFVQLTLGWPLYLMFNVSGRPYDRFACHFDPQSPIYSDRERAQIFLSDAGILAATYGLYRLCAAKGLAWVLCVYGGPLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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