Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004293`

染色体: Chr01 坐标: 61135024-61138036 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004293`
名称	SmilChr01G004293
描述	pentatricopeptide repeat-containing protein At3g53360, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61135024 - 61138036 / `-`

ID 对照

NCBI Gene ID	`LOC131001014`
GeneID	`131001014`
locus_tag	`-`
NCBI Name	`LOC131001014`
原始查询	`SmilChr01G004293`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g53360, mitochondrial
产物	pentatricopeptide repeat-containing protein At3g53360%2C mitochondrial
Arabidopsis	`AT3G53360` (AT3G53360) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824504] identity=54.5; qcov=0.937; evalue=0; confidence=high
Rice	`Os06g0506100` - identity=46.4; qcov=0.884; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131001014

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057783164.1`
2	Nucleus	细胞核	0.00000	`XP_057783164.1`
3	Chromosome	染色体	0.00000	`XP_057783164.1`
4	Centromere	着丝粒	0.00000	`XP_057783164.1`
5	Chromatin	染色质	0.00000	`XP_057783164.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61135361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B75
`Chr1:61135493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B86,B9,C23,C44
`Chr1:61135736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr1:61136360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr1:61136429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:61136668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr1:61136673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:61136756`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B17,C36,C70,D6
`Chr1:61136842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:61137355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:61137411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B1,C82,D11
`Chr1:61137465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783164.1

790 aa

395

790

PPR

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

E_motif

PF01535 PPR 134-161 aa PF13041 PPR_2 159-207 aa PF01535 PPR 162-192 aa PF01535 PPR 263-292 aa PF13041 PPR_2 362-408 aa PF01535 PPR 365-394 aa PF01535 PPR 537-563 aa PF13812 PPR_3 565-612 aa PF13041 PPR_2 565-613 aa PF01535 PPR 568-598 aa PF01535 PPR 603-630 aa PF20431 E_motif 685-745 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783164.1`	Pfam	`PF01535`	PPR	Repeat	134	161	1.8e-58	191.5	PPR repeat
`XP_057783164.1`	Pfam	`PF13041`	PPR_2	Repeat	159	207	5.4e-70	232.0	PPR repeat family
`XP_057783164.1`	Pfam	`PF01535`	PPR	Repeat	162	192	1.8e-58	191.5	PPR repeat
`XP_057783164.1`	Pfam	`PF01535`	PPR	Repeat	263	292	1.8e-58	191.5	PPR repeat
`XP_057783164.1`	Pfam	`PF13041`	PPR_2	Repeat	362	408	5.4e-70	232.0	PPR repeat family
`XP_057783164.1`	Pfam	`PF01535`	PPR	Repeat	365	394	1.8e-58	191.5	PPR repeat
`XP_057783164.1`	Pfam	`PF01535`	PPR	Repeat	537	563	1.8e-58	191.5	PPR repeat
`XP_057783164.1`	Pfam	`PF13812`	PPR_3	Repeat	565	612	4.9e-28	97.7	Pentatricopeptide repeat domain
`XP_057783164.1`	Pfam	`PF13041`	PPR_2	Repeat	565	613	5.4e-70	232.0	PPR repeat family
`XP_057783164.1`	Pfam	`PF01535`	PPR	Repeat	568	598	1.8e-58	191.5	PPR repeat
`XP_057783164.1`	Pfam	`PF01535`	PPR	Repeat	603	630	1.8e-58	191.5	PPR repeat
`XP_057783164.1`	Pfam	`PF20431`	E_motif	Repeat	685	745	3.6e-17	63.1	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927181.1
CTCGACGAATTGCCCCACTAAGGTTTTGGGGGAATCTCAGTTCATAATTATTAGTAGTTGCTAAACATTGTCTTCCAAAATTCTGTGTTTGCTTCAGCTATCTGTTCTCGTGTAGAAGTTGCGCTTTTGAAGTCTTGATCAGATAGAAGAAGCCGGAGAATTTAATGTTGACATCAGCATTGCTTTCGAGCAGAACTGAGGAGGAAGATGGTTTCTTTTGAAGTCTTTTTGTACTTCTACAAAGAATGAAATAGTTATAT...

CDS

1 records

下载 CDS FASTA

LOC131001014
ATGTATTTTGTGCATACAGACTATATGCTATGTGTGATGCAGATAGGGGCCCTTGAAAGGATCCGGTATATTCTGCACAAGAAGATGATACGAAGGTTGCAGTCTACTCTTAAATGTTCCTGCAGCTATGTCAACCGCGGCATTCACAACGCTGCGTGTTCAAGTTTCAAGAACGAACAACCTTTTAATGAATATATAGGCTCCTTGTGCAAGCAAAAGCTTTTCAAAGACGCCCTTCACGCCTTTGATGTTTCACAAAA...

Protein

1 records

下载 Protein FASTA

XP_057783164.1
MYFVHTDYMLCVMQIGALERIRYILHKKMIRRLQSTLKCSCSYVNRGIHNAACSSFKNEQPFNEYIGSLCKQKLFKDALHAFDVSQKKADFLVDPTTYIHLISACSSLRSVEYGRKIHDHLLRSNLLPYMILENHIINMYGKCGSTVDAKKVFDSMWERNVVSWNALIAGYSQHGQDIEAIESYIQMQRSGFMPDHFTFGGVIKACSSLTEAGLGEQLHAQVVKSEFGSHLIAQNALIAMYNKFGRINKAWVVFSLIESK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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