Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004299`

染色体: Chr01 坐标: 61172693-61174484 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004299`
名称	SmilChr01G004299
描述	rhodanese-like domain-containing protein 9, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61172693 - 61174484 / `-`

ID 对照

NCBI Gene ID	`LOC131001166`
GeneID	`131001166`
locus_tag	`-`
NCBI Name	`LOC131001166`
原始查询	`SmilChr01G004299`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rhodanese-like domain-containing protein 9, chloroplastic
产物	rhodanese-like domain-containing protein 9%2C chloroplastic
Arabidopsis	`AT2G42220` (AT2G42220) Rhodanese/Cell cycle control phosphatase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818822] identity=70.8; qcov=1.02; evalue=3.35e-115; confidence=high
Rice	`Os09g0279400` (OsStr3) - identity=66.8; qcov=0.952; evalue=1.51e-104; confidence=high
GO	GO:0009507 (chloroplast)
KEGG	-
Pfam	PF00581 (Rhodanese)
InterPro	-
eggNOG	-
NR	GeneID:131001166

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783463.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057783463.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057783463.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057783469.1`
5	Nucleus	细胞核	0.00000	`XP_057783463.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61173129`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr1:61173288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,B68
`Chr1:61173527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:61173786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B77,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783463.1

231 aa

116

231

Rhodanese

PF00581 Rhodanese 50-170 aa

XP_057783469.1

231 aa

116

231

Rhodanese

PF00581 Rhodanese 50-170 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783463.1`	Pfam	`PF00581`	Rhodanese	Domain	50	170	8.5e-11	42.9	Rhodanese-like domain
`XP_057783469.1`	Pfam	`PF00581`	Rhodanese	Domain	50	170	8.4e-11	42.9	Rhodanese-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927486.1
AAAGAGCATAATAAAGATATCCAATCTCATAAGTTATTTGTGCCACGTGGCAGAAACCCATTCACAGTCGTAAATTTCGTTGGTCCCTTAGCTTAGACGAAAGTAGACAAAAAGCAAACCATAATCTGCAGAGAGGCAGCAGAGTGGAGACATGGCAGGGATAACATGTTCTTACCACTTAGCATTCTCCTCTCAGAGCAACTTGAGTCCATCTAGGTTAGTAATCGGAGCAACAAAGAGACGAGTAGTGCACATAAAAA...

XM_057927480.1
AAAAGCAAACCATAATCTGCAGAGAGGCAGCAGAGTGGAGACATGGCAGGGATAACATGTTCTTACCACTTAGCATTCTCCTCTCAGAGGAATGTGGTTTCAGCAACTTGAGTCCATCTAGGTTAGTAATCGGAGCAACAAAGAGACGAGTAGTGCACATAAAAAGATCCGTGACAAAGGCAGAAGTGAACTTCGTGGACTCTGATGAGGCGAAGAAGCTGATAGCAGTCGAGGGCTACGCAGTTGTAGATGTTCGCGAC...

CDS

2 records

下载 CDS FASTA

LOC131001166
ATGGCAGGGATAACATGTTCTTACCACTTAGCATTCTCCTCTCAGAGCAACTTGAGTCCATCTAGGTTAGTAATCGGAGCAACAAAGAGACGAGTAGTGCACATAAAAAGATCCGTGACAAAGGCAGAAGTGAACTTCGTGGACTCTGATGAGGCGAAGAAGCTGATAGCAGTCGAGGGCTACGCAGTTGTAGATGTTCGCGACAAAACTCAGTTTGAGAGAGCCCACATAAAGGACTGCTATCACGTCCCATTATTCAT...

LOC131001166
ATGTTCTTACCACTTAGCATTCTCCTCTCAGAGGAATGTGGTTTCAGCAACTTGAGTCCATCTAGGTTAGTAATCGGAGCAACAAAGAGACGAGTAGTGCACATAAAAAGATCCGTGACAAAGGCAGAAGTGAACTTCGTGGACTCTGATGAGGCGAAGAAGCTGATAGCAGTCGAGGGCTACGCAGTTGTAGATGTTCGCGACAAAACTCAGTTTGAGAGAGCCCACATAAAGGACTGCTATCACGTCCCATTATTCAT...

Protein

2 records

下载 Protein FASTA

XP_057783463.1
MFLPLSILLSEECGFSNLSPSRLVIGATKRRVVHIKRSVTKAEVNFVDSDEAKKLIAVEGYAVVDVRDKTQFERAHIKDCYHVPLFIQNNDNDLGTIIKRTVHNNFSGLFFGLPFTKPNPEFVQSVKSQFSSESKLLLVCQEGLRSTAAANKLEEAGYQNIACITSGLQSVKPGTFDAVGSTELQNAGKAGLIQIQGKISAVLGTVLICAFLFITFFPDQAEKLFQLAPTS

XP_057783469.1
MAGITCSYHLAFSSQSNLSPSRLVIGATKRRVVHIKRSVTKAEVNFVDSDEAKKLIAVEGYAVVDVRDKTQFERAHIKDCYHVPLFIQNNDNDLGTIIKRTVHNNFSGLFFGLPFTKPNPEFVQSVKSQFSSESKLLLVCQEGLRSTAAANKLEEAGYQNIACITSGLQSVKPGTFDAVGSTELQNAGKAGLIQIQGKISAVLGTVLICAFLFITFFPDQAEKLFQLAPTS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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