当前解析结果
SmilChr01G004305| 统一新 Gene ID | SmilChr01G004305 |
|---|---|
| 名称 | SmilChr01G004305 |
| 描述 | polygalacturonase inhibitor 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61246807 - 61247948 / - |
| NCBI Gene ID | LOC131001207 |
|---|---|
| GeneID | 131001207 |
| locus_tag | - |
| NCBI Name | LOC131001207 |
| 原始查询 | SmilChr01G004305 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polygalacturonase inhibitor 2-like |
| 产物 | polygalacturonase inhibitor 2-like |
| Arabidopsis | AT5G06860 (PGIP1)polygalacturonase inhibiting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:830577] identity=50.2; qcov=0.959; evalue=1.28e-96; confidence=high |
| Rice | Os05g0104600 (PGIP3)- identity=39.8; qcov=0.997; evalue=8.14e-71; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001207 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.80000 | XP_057783512.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057783512.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057783512.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057783512.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057783512.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61246890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr1:61247343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr1:61247527 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr1:61247533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr1:61247672 |
T |
TGC |
2bp_insertion | frameshift_variant | 11 | A10,A24,A25,B113,B32,B33,B76,B98,C27,C76,C8 |
Chr1:61247679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,C82,D7 |
Chr1:61247725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:61247830 |
A |
ATG |
2bp_insertion | frameshift_variant | 5 | B17,B4,C70,C8,D6 |
Chr1:61247830 |
A |
ATG |
2bp_insertion | CDS_variant | 5 | B17,B4,C70,C8,D6 |
Chr1:61247836 |
A |
ACC |
2bp_insertion | frameshift_variant | 9 | A11,B121,B125,B28,B81,C12,C16,C36,D5 |
Chr1:61247839 |
AGC |
A |
2bp_deletion | frameshift_variant | 9 | A11,B121,B125,B28,B81,C12,C16,C36,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783512.1PF08263
LRRNT_2 18-55 aa
PF00560
LRR_1 134-156 aa
PF00560
LRR_1 158-179 aa
PF00560
LRR_1 186-204 aa
PF00560
LRR_1 253-273 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783512.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 18 | 55 | 6.9e-12 | 46.1 | Leucine rich repeat N-terminal domain |
XP_057783512.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 134 | 156 | 7.2e-20 | 67.5 | Leucine Rich Repeat |
XP_057783512.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 158 | 179 | 7.2e-20 | 67.5 | Leucine Rich Repeat |
XP_057783512.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 186 | 204 | 7.2e-20 | 67.5 | Leucine Rich Repeat |
XP_057783512.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 253 | 273 | 7.2e-20 | 67.5 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。