当前解析结果
SmilChr01G004307| 统一新 Gene ID | SmilChr01G004307 |
|---|---|
| 名称 | SmilChr01G004307 |
| 描述 | polygalacturonase inhibitor-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61254262 - 61255649 / - |
| NCBI Gene ID | LOC131001224 |
|---|---|
| GeneID | 131001224 |
| locus_tag | - |
| NCBI Name | LOC131001224 |
| 原始查询 | SmilChr01G004307 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polygalacturonase inhibitor-like |
| 产物 | polygalacturonase inhibitor-like |
| Arabidopsis | AT5G06860 (PGIP1)polygalacturonase inhibiting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:830577] identity=52.1; qcov=0.939; evalue=9.5e-102; confidence=high |
| Rice | Os05g0104200 (PGIP1)- identity=42.7; qcov=0.96; evalue=1.66e-74; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001224 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.80000 | XP_057783534.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057783534.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057783534.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057783534.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057783534.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61254435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:61254442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C50 |
Chr1:61254465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:61254469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,C79,C87 |
Chr1:61254538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,C79,C87 |
Chr1:61254556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C59 |
Chr1:61254622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:61254658 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C59 |
Chr1:61254856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A25,B98,C27,C8 |
Chr1:61255070 |
G |
GA |
1bp_insertion | frameshift_variant | 3 | B124,B40,D7 |
Chr1:61255070 |
G |
GA |
1bp_insertion | CDS_variant | 3 | B124,B40,D7 |
Chr1:61255145 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783534.1PF08263
LRRNT_2 26-64 aa
PF13855
LRR_8 92-152 aa
PF00560
LRR_1 118-139 aa
PF00560
LRR_1 141-163 aa
PF00560
LRR_1 166-186 aa
PF00560
LRR_1 193-210 aa
PF00560
LRR_1 263-281 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783534.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 26 | 64 | 1.8e-09 | 38.4 | Leucine rich repeat N-terminal domain |
XP_057783534.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 92 | 152 | 1.3e-12 | 48.0 | Leucine rich repeat |
XP_057783534.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 118 | 139 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
XP_057783534.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 141 | 163 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
XP_057783534.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 166 | 186 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
XP_057783534.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 193 | 210 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
XP_057783534.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 263 | 281 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。