Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004321`

染色体: Chr01 坐标: 61376340-61390721 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004321`
名称	SmilChr01G004321
描述	uncharacterized SmilChr01G004321
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61376340 - 61390721 / `+`

ID 对照

NCBI Gene ID	`LOC131001285`
GeneID	`131001285`
locus_tag	`-`
NCBI Name	`LOC131001285`
原始查询	`SmilChr01G004321`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:827643]; symbol=AT4G19050; hit=AT4G19050; species=arabidopsis; confidence=low
产物	NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:827643]; symbol=AT4G19050; hit=AT4G19050; species=arabidopsis; confidence=low
Arabidopsis	`AT4G19050` (AT4G19050) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:827643] identity=31; qcov=0.322; evalue=4.8e-63; confidence=low
Rice	`Os01g0799100` - identity=35.6; qcov=0.097; evalue=1.12e-19; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF23247 (LRR_RPS2)
InterPro	-
eggNOG	-
NR	GeneID:131001285

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057783617.1`
2	Cell membrane	细胞膜	0.60000	`XP_057783617.1`
3	Cytoplasm	细胞质	0.40000	`XP_057783617.1`
4	Nucleus	细胞核	0.00000	`XP_057783617.1`
5	Chromosome	染色体	0.00000	`XP_057783617.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61376978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B16,D10,D11
`Chr1:61377016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr1:61377031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:61377045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B38
`Chr1:61377121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:61377239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr1:61382283`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:61382601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,C82,D10
`Chr1:61382731`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr1:61383058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr1:61383061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr1:61383079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783617.1

1972 aa

986

1972

LRR_RPS2

PF23247 LRR_RPS2 1700-1817 aa PF23247 LRR_RPS2 1797-1917 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783617.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1700	1817	1.9e-21	77.4	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057783617.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1797	1917	1.9e-21	77.4	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009093898.1
ATATAAACCCCTTATGTTTCGAAGTAATATTGTCGGAAAAATCATTTTCATTCTATATCTTTGCAAGAAGGAAAAGAGAGAAATTTGTGGCTCCAATTTTCAGGTTGCAAAATGAGTGAGAGTGAGCAAAAAGAGCAACAAAGTAAAGCTGAGGAGGGGTTGGAGAATAAGAAAGACGAATTTGTTGAGGCCTTGGAGAAGAACAAGGATGAGCAAGGGCTGCGGGAAGCTTTCGGCGTCCTCGCCAAGGGTTCGCCCAC...

XM_057927634.1
ATATAAACCCCTTATGTTTCGAAGTAATATTGTCGGAAAAATCATTTTCATTCTATATCTTTGCAAGAAGGAAAAGAGAGAAATTTGTGGCTCCAATTTTCAGGTTGCAAAATGAGTGAGAGTGAGCAAAAAGAGCAACAAAGTAAAGCTGAGGAGGGGTTGGAGAATAAGAAAGACGAATTTGTTGAGGCCTTGGAGAAGAACAAGGATGAGCAAGGGCTGCGGGAAGCTTTCGGCGTCCTCGCCAAGGGTTCGCCCAC...

CDS

1 records

下载 CDS FASTA

LOC131001285
ATGAGTGAGAGTGAGCAAAAAGAGCAACAAAGTAAAGCTGAGGAGGGGTTGGAGAATAAGAAAGACGAATTTGTTGAGGCCTTGGAGAAGAACAAGGATGAGCAAGGGCTGCGGGAAGCTTTCGGCGTCCTCGCCAAGGGTTCGCCCACGACTTGCATCAAGCCCGTCCATCTTCATCGCGCACTCGCTATTCGAGGTCAGGAAATCTCTCTTCAAAAGACTGAGACTATTATTCAACAACTCAATAAAGAAGGGACATT...

Protein

1 records

下载 Protein FASTA

XP_057783617.1
MSESEQKEQQSKAEEGLENKKDEFVEALEKNKDEQGLREAFGVLAKGSPTTCIKPVHLHRALAIRGQEISLQKTETIIQQLNKEGTFSCDDFVRIVNVILAMGAVKKNDVEGLKKAFCVLTKSDKPTARVGVEDVQLALIIPESELLLHNAKQMVQEVNVQGSFNCHEFLDLFKLLEEPGEPNQTKKIYEKLKHLEEKETIIVYGREGVGKTWAAREVANLAVRKHDLDAAKKDDSDAKKKDVEGFDAAIWVYLNRIYKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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