Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004323

染色体: Chr01 坐标: 61396640-61402054 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004323
名称SmilChr01G004323
描述uncharacterized SmilChr01G004323
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向61396640 - 61402054 / +

ID 对照

NCBI Gene IDLOC131001303
GeneID131001303
locus_tag-
NCBI NameLOC131001303
原始查询SmilChr01G004323

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述hit=Os09g0487200; species=rice; confidence=high
产物hit=Os09g0487200; species=rice; confidence=high
ArabidopsisAT2G42320 (AT2G42320)
nucleolar protein gar2-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818833]
identity=60.3; qcov=0.718; evalue=0; confidence=high
RiceOs09g0487200
-
identity=59.5; qcov=0.735; evalue=0; confidence=high
GOGO:0005643 (nuclear pore)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131001303

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057783646.1
2 Nucleus 细胞核 0.00000 XP_057783646.1
3 Chromosome 染色体 0.00000 XP_057783646.1
4 Centromere 着丝粒 0.00000 XP_057783646.1
5 Chromatin 染色质 0.00000 XP_057783646.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:61397878 C T EMS_canonical_SNV CDS_variant 1 B68
Chr1:61397958 GA G 1bp_deletion frameshift_variant 1 B6
Chr1:61397958 GA G 1bp_deletion CDS_variant 1 B6
Chr1:61398041 C T EMS_canonical_SNV CDS_variant 4 B50,B86,B9,C44
Chr1:61398286 CT C 1bp_deletion frameshift_variant 37 A21,B110,B114,B12,B125,B129,B134,B139,B18,B24,B27,B31,B37,B47,B56,B61,B66,B8,B87,B89,B9,B90,B92,B96,B97,C12,C18,C22,C39,C47,C53,C55,C56,C57,C87,D1,D11
Chr1:61398444 G A EMS_canonical_SNV CDS_variant 1 D10
Chr1:61398512 G A EMS_canonical_SNV CDS_variant 1 D10
Chr1:61398643 C T EMS_canonical_SNV CDS_variant 1 C54
Chr1:61398830 C T EMS_canonical_SNV CDS_variant 1 C1
Chr1:61399196 C T EMS_canonical_SNV CDS_variant 1 A20
Chr1:61399664 C T EMS_canonical_SNV CDS_variant 4 B21,B84,C3,C50
Chr1:61399694 C T EMS_canonical_SNV CDS_variant 4 B21,B84,C3,C50

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057927670.1
GGGCCCCTCTTCCGCACTCCTCTACCACCACTTCCCATAATTGCACTGTAAACCAATTCTCACTTCTCACCTCACTCCACCACCTCTACACTCATAATATATATGCACATGGTCGTGCATTATGCTTAATCGTTTCCAGCCGAGAGAGGGAAGGAGGGAGGAGCTTGGTTGGCGACTGTAGAAAAAGCTTGTGAAGTTCGATGTTGCTATTCCTAAAAGCTACGGTAAATTAATACTATCTCAATTACACCTTTTAACTG...
XM_057927663.1
CCTCTTCCGCACTCCTCTACCACCACTTCCCATAATTGCACTGTAAACCAATTCTCACTTCTCACCTCACTCCACCACCTCTACACTCATAATATATATGCACATGGTCGTGCATTATGCTTAATCGTTTCCAGCCGAGAGAGGGAAGGAGGGAGGAGCTTGGTTGGCGACTGTAGAAAAAGCTTGTGAAGTTCGATGTTGCTATTCCTAAAAGCTACGTGATAAAGGAGAAATATTCTCAGCATGAAGGAGACTGACAG...

CDS

2 records

下载 CDS FASTA
LOC131001303
ATGAAGGAGACTGACAGGAGAAAGGGCCTAAACAACAAAGAGAAAGCCCGTCCTGCAAGACCTGAAACAAGGGATCGGAAGCTGCCAGGAAAGAATGTTGGTAGAAACTTGAAGGAAAAAGAGGTTGAGGCCAAGCCTTCGTCTGATAAACAGAACATAAATATTTTAGGAAGCGACTTAAAAAGTGGTGCCGAACCATCAGAAGCTTTCGAGAATGTGGTCATAGATTATGTCGATGATGAATGCAGGTCTGAGGAATC...
LOC131001303
ATGAAGGAGACTGACAGGAGAAAGGGCCTAAACAACAAAGAGAAAGCCCGTCCTGCAAGACCTGAAACAAGGGATCGGAAGCTGCCAGGAAAGAATGTTGGTAGAAACTTGAAGGAAAAAGAGGTTGAGGCCAAGCCTTCGTCTGATAAACAGAACATAAATATTTTAGGAAGCGACTTAAAAAGTGGTGCCGAACCATCAGAAGCTTTCGAGAATGTGGTCATAGATTATGTCGATGATGAATGCAGGTCTGAGGAATC...

Protein

2 records

下载 Protein FASTA
XP_057783646.1
MKETDRRKGLNNKEKARPARPETRDRKLPGKNVGRNLKEKEVEAKPSSDKQNINILGSDLKSGAEPSEAFENVVIDYVDDECRSEESLHNTRTLKTDERQGNEKLTDNSSDMDIVDESDAETTNDSVSSHGDPQTADEGKAEKVTRVRNLSSGSDGSAQAQRLKSDKRANSLQIKASKQTPRKGPEKGLLKSAKSSSDSLKNMKVHPKPLSDSSEGADSQPLELDNGVDSLDEASNGAHTVCSDDEAVDTEESHKREDKA...
XP_057783653.1
MKETDRRKGLNNKEKARPARPETRDRKLPGKNVGRNLKEKEVEAKPSSDKQNINILGSDLKSGAEPSEAFENVVIDYVDDECRSEESLHNTRTLKTDERQGNEKLTDNSSDMDIVDESDAETTNDSVSSHGDPQTADEGKAEKVTRVRNLSSGSDGSAQAQRLKSDKRANSLQIKASKQTPRKGPEKGLLKSAKSSSDSLKNMKVHPKPLSDSSEGADSQPLELDNGVDSLDEASNGAHTVCSDDEAVDTEESHKREDKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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