当前解析结果
SmilChr01G004324| 统一新 Gene ID | SmilChr01G004324 |
|---|---|
| 名称 | SmilChr01G004324 |
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61402585 - 61404376 / + |
| NCBI Gene ID | LOC131001344 |
|---|---|
| GeneID | 131001344 |
| locus_tag | - |
| NCBI Name | LOC131001344 |
| 原始查询 | SmilChr01G004324 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 产物 | beta-D-glucosyl crocetin beta-1%2C6-glucosyltransferase-like |
| Arabidopsis | AT5G65550 (AT5G65550)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836681] identity=34.1; qcov=0.957; evalue=4.3e-75; confidence=low |
| Rice | Os07g0672700- identity=36.5; qcov=1.06; evalue=3.6e-102; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF06722 (EryCIII-like_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001344 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057783697.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057783697.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783697.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783697.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783697.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61402998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr1:61403145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C5 |
Chr1:61403237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,B99 |
Chr1:61403289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B84,C3,C50 |
Chr1:61403373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,C19,C5,C58 |
Chr1:61403438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B84,C3,C50 |
Chr1:61403565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B131,C35,C53 |
Chr1:61403597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B21,B84,C3,C50 |
Chr1:61403649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B84,C3,C50 |
Chr1:61403671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B22,B41,C44,D11 |
Chr1:61403688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C59,C67 |
Chr1:61403815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,C63,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783697.1PF00201
UDPGT 260-387 aa
PF06722
EryCIII-like_C 328-442 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783697.1 |
Pfam | PF00201 |
UDPGT | Family | 260 | 387 | 9.2e-17 | 61.7 | UDP-glucoronosyl and UDP-glucosyl transferase |
XP_057783697.1 |
Pfam | PF06722 |
EryCIII-like_C | Domain | 328 | 442 | 1e-07 | 32.8 | Erythromycin biosynthesis protein CIII-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。