Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004324

染色体: Chr01 坐标: 61402585-61404376 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004324
名称SmilChr01G004324
描述beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向61402585 - 61404376 / +

ID 对照

NCBI Gene IDLOC131001344
GeneID131001344
locus_tag-
NCBI NameLOC131001344
原始查询SmilChr01G004324

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like
产物beta-D-glucosyl crocetin beta-1%2C6-glucosyltransferase-like
ArabidopsisAT5G65550 (AT5G65550)
UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836681]
identity=34.1; qcov=0.957; evalue=4.3e-75; confidence=low
RiceOs07g0672700
-
identity=36.5; qcov=1.06; evalue=3.6e-102; confidence=medium
GOGO:0008194 (UDP-glycosyltransferase activity)
KEGG-
PfamPF00201 (UDPGT); PF06722 (EryCIII-like_C)
InterPro-
eggNOG-
NRGeneID:131001344

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057783697.1
2 Cytosol 细胞质基质 1.00000 XP_057783697.1
3 Nucleus 细胞核 0.00000 XP_057783697.1
4 Chromosome 染色体 0.00000 XP_057783697.1
5 Centromere 着丝粒 0.00000 XP_057783697.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:61402998 G A EMS_canonical_SNV CDS_variant 1 D7
Chr1:61403145 C T EMS_canonical_SNV CDS_variant 2 C19,C5
Chr1:61403237 C T EMS_canonical_SNV CDS_variant 2 B4,B99
Chr1:61403289 G A EMS_canonical_SNV CDS_variant 3 B84,C3,C50
Chr1:61403373 C T EMS_canonical_SNV CDS_variant 4 B1,C19,C5,C58
Chr1:61403438 C T EMS_canonical_SNV CDS_variant 4 A13,B84,C3,C50
Chr1:61403565 C T EMS_canonical_SNV CDS_variant 4 B12,B131,C35,C53
Chr1:61403597 G A EMS_canonical_SNV CDS_variant 5 A13,B21,B84,C3,C50
Chr1:61403649 G A EMS_canonical_SNV CDS_variant 3 B84,C3,C50
Chr1:61403671 C T EMS_canonical_SNV CDS_variant 4 B22,B41,C44,D11
Chr1:61403688 G A EMS_canonical_SNV CDS_variant 2 C59,C67
Chr1:61403815 G A EMS_canonical_SNV CDS_variant 3 A8,C63,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057783697.1
460 aa
N
1
230
460
UDPGT
EryCIII-like_C
C
PF00201 UDPGT 260-387 aa PF06722 EryCIII-like_C 328-442 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783697.1 Pfam PF00201 UDPGT Family 260 387 9.2e-17 61.7 UDP-glucoronosyl and UDP-glucosyl transferase
XP_057783697.1 Pfam PF06722 EryCIII-like_C Domain 328 442 1e-07 32.8 Erythromycin biosynthesis protein CIII-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057927714.1
TTGTAAAACCCTAATTGAGTATAATAAACATTTGTTTTAGAGGATCCTATTTTATTAATATTCCATCAAAAATACTTGTCACGTAAGGAAATTTCAATCCCACTCTCAAAACATTCTCCTAAGATTCTACTTCCCATACAGACCCTCCTTTCCTTTTCTTTTCAGCATTCATGGAAAATTGCCATCTTTTGCACCCATGCATGCAGAAAATTCACAAACCCTCAAACCGAACAGAGAAGGAGAGAAAAAGCATAAATACA...

CDS

1 records

下载 CDS FASTA
LOC131001344
ATGAATTCCACCAAAAACCAAAGCCCCCGTATCTTGATGTTCCCATGGTTAGGCTATGGTCACATAACACCCTATCTCGAGCTAGCCAAAAAACTCACAATAAAAGGCTTCTACATATACTTGTGCTCCACTCAAGCCACACTCTCTTCCATCGAGAAAAAAATCACTCAAAATTTCTCTAACTCCATAGAACTAGTGCCCCTTTTGTTGGAGGTTTCATCAGAGCTCCCTGCAAAGTTCCACACCACCAATGGCCTCCC...

Protein

1 records

下载 Protein FASTA
XP_057783697.1
MNSTKNQSPRILMFPWLGYGHITPYLELAKKLTIKGFYIYLCSTQATLSSIEKKITQNFSNSIELVPLLLEVSSELPAKFHTTNGLPPHLMVKLKEAFDKSVENFSAILKNLKPDLLIFDFLQPWAPLLAEAQKIPSVIFITSSSVMTSLMFHHFKNPDTDFPFKNIRFRDYESRFMDELLENARDCREREKGSIGVDKSCKIVLIKGFREIEGRYIDYVSGLVGKRFVPVGPLVQEPSLDDGGSSEIFSWLDKKEVRST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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