Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004329`

染色体: Chr01 坐标: 61433689-61437082 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004329`
名称	SmilChr01G004329
描述	carboxyl-terminal-processing peptidase 3, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61433689 - 61437082 / `-`

ID 对照

NCBI Gene ID	`LOC131001691`
GeneID	`131001691`
locus_tag	`-`
NCBI Name	`LOC131001691`
原始查询	`SmilChr01G004329`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	carboxyl-terminal-processing peptidase 3, chloroplastic
产物	carboxyl-terminal-processing peptidase 3%2C chloroplastic
Arabidopsis	`AT3G57680` (AT3G57680) Peptidase S41 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824937] identity=74.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0318600` (OsCttP3) - identity=72; qcov=1.01; evalue=0; confidence=high
GO	GO:0004175 (endopeptidase activity); GO:0005515 (protein binding); GO:0006508 (proteolysis); GO:0008236 (serine-type peptidase activity)
KEGG	-
Pfam	PF00595 (PDZ); PF03572 (Peptidase_S41); PF13180 (PDZ_2); PF17820 (PDZ_6)
InterPro	-
eggNOG	-
NR	GeneID:131001691

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057784253.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057784253.1`
3	Secreted	分泌到胞外	0.80000	`XP_057784261.1`
4	Chloroplast thylakoid	类囊体	0.80000	`XP_057784253.1`
5	Cytoplasm	细胞质	0.20000	`XP_057784261.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61433885`	`G`	`A`	EMS_canonical_SNV	stop_gained	14	A19,A4,A8,B100,B11,B25,B48,B64,B81,B9,C25,C35,C49,C71
`Chr1:61433961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B13,B36,B37,B50
`Chr1:61433977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:61434021`	`G`	`GCA`	2bp_insertion	frameshift_variant	30	A19,A4,A8,B10,B100,B102,B103,B11,B118,B32,B48,B55,B59,B64,B81,B83,B9,C1,C15,C24,C25,C35,C40,C42,C49,C52,C55,C57,C71,D10
`Chr1:61434072`	`G`	`GA`	1bp_insertion	frameshift_variant	23	A4,B10,B102,B103,B11,B32,B48,B55,B76,B81,B83,B9,C1,C15,C24,C35,C40,C49,C55,C57,C71,D10,D8
`Chr1:61434234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B15,B23,C77
`Chr1:61434264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B140,B36
`Chr1:61434465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:61434479`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B56
`Chr1:61434479`	`TC`	`T`	1bp_deletion	CDS_variant	1	B56
`Chr1:61435182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:61435206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784253.1

516 aa

258

516

PDZ

PDZ_2

PDZ_6

Peptidase_S41

PF00595 PDZ 196-266 aa PF13180 PDZ_2 203-266 aa PF17820 PDZ_6 214-266 aa PF03572 Peptidase_S41 308-470 aa

XP_057784261.1

368 aa

184

368

PDZ

PDZ_2

PDZ_6

Peptidase_S41

PF00595 PDZ 48-118 aa PF13180 PDZ_2 55-118 aa PF17820 PDZ_6 66-118 aa PF03572 Peptidase_S41 160-322 aa

XP_057784268.1

368 aa

184

368

PDZ

PDZ_2

PDZ_6

Peptidase_S41

PF00595 PDZ 48-118 aa PF13180 PDZ_2 55-118 aa PF17820 PDZ_6 66-118 aa PF03572 Peptidase_S41 160-322 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784253.1`	Pfam	`PF00595`	PDZ	Domain	196	266	5e-10	40.3	PDZ domain
`XP_057784253.1`	Pfam	`PF13180`	PDZ_2	Domain	203	266	1.1e-06	29.5	PDZ domain
`XP_057784253.1`	Pfam	`PF17820`	PDZ_6	Domain	214	266	7e-08	32.8	PDZ domain
`XP_057784253.1`	Pfam	`PF03572`	Peptidase_S41	Family	308	470	5.1e-50	170.0	Peptidase family S41
`XP_057784261.1`	Pfam	`PF00595`	PDZ	Domain	48	118	3.1e-10	41.0	PDZ domain
`XP_057784261.1`	Pfam	`PF13180`	PDZ_2	Domain	55	118	6.3e-07	30.3	PDZ domain
`XP_057784261.1`	Pfam	`PF17820`	PDZ_6	Domain	66	118	4.1e-08	33.5	PDZ domain
`XP_057784261.1`	Pfam	`PF03572`	Peptidase_S41	Family	160	322	2.5e-50	171.0	Peptidase family S41
`XP_057784268.1`	Pfam	`PF00595`	PDZ	Domain	48	118	3.1e-10	41.0	PDZ domain
`XP_057784268.1`	Pfam	`PF13180`	PDZ_2	Domain	55	118	6.3e-07	30.3	PDZ domain
`XP_057784268.1`	Pfam	`PF17820`	PDZ_6	Domain	66	118	4.1e-08	33.5	PDZ domain
`XP_057784268.1`	Pfam	`PF03572`	Peptidase_S41	Family	160	322	2.5e-50	171.0	Peptidase family S41

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928270.1
CTCCGAAGATACTCGAAGACACGCAACTAATTTAACCACCACAGACCTCAAGATTCACGTGGGCCGCCACCCTCTTCAGGGATCAAGAAACCAAAATGATAACCGTCTCCCTCCATTATTTCCAACTCTTTTGGGGGCTGTTATAATCTCATCACAGCAAGAAATTCTTGCATCAAATAGATTCTCCTGAAAATGGAAGCCCTCAACTCGAATCTTGATTGCACCCTCTCCACTCTGTCCAAATTCACATCAAAACCCAC...

XM_057928278.1
CTCAAGATTCACGTGGGCCGCCACCCTCTTCAGGGATCAAGAAACCAAAATGATAACCGTCTCCCTCCATTATTTCCAACTCTTTTGGGGGCTGTTATAATCTCATCACAGCAAGAAATTCTTGCATCAAATAGATTCTCCTGAAAATGGAAGCCCTCAACTCGAATCTTGATTGCACCCTCTCCACTCTGTCCAAATTCACATCAAAACCCACCTCGAAACCGTTCTTCTCTTGCCGATCTCTGAGGTTGAGCAGCTGT...

CDS

3 records

下载 CDS FASTA

LOC131001691
ATGGAAGCCCTCAACTCGAATCTTGATTGCACCCTCTCCACTCTGTCCAAATTCACATCAAAACCCACCTCGAAACCGTTCTTCTCTTGCCGATCTCTGAGGTTGAGCAGCTGTCTGAAGCCCAAGAATCTGAGATTGAGAAGCATTCAATGTTCGGACAAGAAAAGGGGCAGTTTGGAATCGGAGAATGGGAGTTCTTTAGCAGAAAACGAGGATTTGTCGAAAAGGGTACGAAGAGGAGTGCTTGGTTTCGCCGCTGC...

LOC131001691
ATGGTTGAAATGTTTCCACTGAGGTCAGAAGATGCTGCATACAACAAACTCAAAGGCATGCTTTCGACTCTGGGTGATCCGTTCACACGCATCATCAGTCCTAAGGAATATCAAGGTTTTAGAATAGGAAGTGATGGGAATTTGCAGGGTGTTGGCTTATTCATCAATGCTGAGCCAAAGACCGGGCACCTGGTTGTTCTGTCATGCATAGAGAATAGCCCGGCTGCACGTGCTGGCATCCACGAAGGAGACGAGCTAAT...

Protein

3 records

下载 Protein FASTA

XP_057784253.1
MEALNSNLDCTLSTLSKFTSKPTSKPFFSCRSLRLSSCLKPKNLRLRSIQCSDKKRGSLESENGSSLAENEDLSKRVRRGVLGFAAAVSLCCNSPASAESLTVAFPVSHTREVNSVQRTLVEAWGLIRETFIDPTFNHQDWDLKLQQTMVEMFPLRSEDAAYNKLKGMLSTLGDPFTRIISPKEYQGFRIGSDGNLQGVGLFINAEPKTGHLVVLSCIENSPAARAGIHEGDELMEINGERLDGVASEAAAQKLRGRVGT...

XP_057784261.1
MVEMFPLRSEDAAYNKLKGMLSTLGDPFTRIISPKEYQGFRIGSDGNLQGVGLFINAEPKTGHLVVLSCIENSPAARAGIHEGDELMEINGERLDGVASEAAAQKLRGRVGTTVTVKVHSFDELGSPCIREVRIPREVINLSPVSSAIILHRAPDGHVSKTGYVKLSTFSQTAAMEMENTVYDMENQGVQSYILDLRNNPGGLVKAGLDVAQIWLDGTGTLVNTIDREGNMLPINMIDGHALTRDPLVVLVNEGSASASE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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