当前解析结果
SmilChr01G004333| 统一新 Gene ID | SmilChr01G004333 |
|---|---|
| 名称 | SmilChr01G004333 |
| 描述 | transcription factor MYC2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61463145 - 61464454 / - |
| NCBI Gene ID | LOC131002002 |
|---|---|
| GeneID | 131002002 |
| locus_tag | - |
| NCBI Name | LOC131002002 |
| 原始查询 | SmilChr01G004333 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYC2-like |
| 产物 | transcription factor MYC2-like |
| Arabidopsis | AT4G00870 (AT4G00870)basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827990] identity=33.2; qcov=1.08; evalue=1.29e-57; confidence=low |
| Rice | Os10g0575000 (OsbHLH009)- identity=45.2; qcov=0.47; evalue=1.91e-41; confidence=medium |
| GO | GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF00010 (HLH); PF14215 (bHLH-MYC_N); PF22754 (bHLH-TF_ACT-like_plant); PF23177 (bHLH_IRO3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002002 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784660.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057784660.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057784660.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057784660.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057784660.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61463286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B79 |
Chr1:61463326 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B91 |
Chr1:61463326 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B91 |
Chr1:61463464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,B79 |
Chr1:61463714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr1:61464103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:61464235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D7 |
Chr1:61464236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr1:61464280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr1:61464322 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B22,B41 |
Chr1:61464322 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B22,B41 |
Chr1:61464326 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B22,B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784660.1PF14215
bHLH-MYC_N 8-53 aa
PF14215
bHLH-MYC_N 60-156 aa
PF00010
HLH 217-263 aa
PF23177
bHLH_IRO3 220-276 aa
PF22754
bHLH-TF_ACT-like_plant 297-368 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784660.1 |
Pfam | PF14215 |
bHLH-MYC_N | Family | 8 | 53 | 6.7e-34 | 118.5 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
XP_057784660.1 |
Pfam | PF14215 |
bHLH-MYC_N | Family | 60 | 156 | 6.7e-34 | 118.5 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
XP_057784660.1 |
Pfam | PF00010 |
HLH | Domain | 217 | 263 | 5.8e-11 | 42.8 | Helix-loop-helix DNA-binding domain |
XP_057784660.1 |
Pfam | PF23177 |
bHLH_IRO3 | Domain | 220 | 276 | 1.3e-08 | 35.8 | Iron-related transcription factor 3 bHLH domain |
XP_057784660.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 297 | 368 | 2.7e-07 | 31.3 | Plant bHLH transcription factor, ACT-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。