当前解析结果
SmilChr01G004336| 统一新 Gene ID | SmilChr01G004336 |
|---|---|
| 名称 | SmilChr01G004336 |
| 描述 | DNA-directed RNA polymerase I subunit 1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61473782 - 61483866 / - |
| NCBI Gene ID | LOC131001430 |
|---|---|
| GeneID | 131001430 |
| locus_tag | - |
| NCBI Name | LOC131001430 |
| 原始查询 | SmilChr01G004336 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA-directed RNA polymerase I subunit 1 |
| 产物 | DNA-directed RNA polymerase I subunit 1 |
| Arabidopsis | AT3G57660 (NRPA1)nuclear RNA polymerase A1 [Source:NCBI gene (formerly Entrezgene);Acc:824935] identity=51.7; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0492300- identity=32.5; qcov=0.568; evalue=5.18e-130; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005736 (RNA polymerase I complex); GO:0006351 (DNA-templated transcription) |
| KEGG | smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00623 (RNA_pol_Rpb1_2); PF04983 (RNA_pol_Rpb1_3); PF04997 (RNA_pol_Rpb1_1); PF04998 (RNA_pol_Rpb1_5); PF05000 (RNA_pol_Rpb1_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001430 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783814.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057783814.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057783814.1 |
| 4 | Nucleolus | 核仁 | 0.20000 | XP_057783814.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61474022 |
T |
TGC |
2bp_insertion | frameshift_variant | 1 | B99 |
Chr1:61474022 |
T |
TGC |
2bp_insertion | CDS_variant | 1 | B99 |
Chr1:61474039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B41 |
Chr1:61474180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B21 |
Chr1:61474219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B129,C49 |
Chr1:61474321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:61474345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr1:61474388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,B7 |
Chr1:61474819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B21 |
Chr1:61474864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B7,C48 |
Chr1:61474868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B86,B9,C27,C44 |
Chr1:61475234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783814.1PF04997
RNA_pol_Rpb1_1 5-459 aa
PF00623
RNA_pol_Rpb1_2 462-646 aa
PF04983
RNA_pol_Rpb1_3 650-847 aa
PF05000
RNA_pol_Rpb1_4 899-1000 aa
PF04998
RNA_pol_Rpb1_5 1007-1629 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783814.1 |
Pfam | PF04997 |
RNA_pol_Rpb1_1 | Domain | 5 | 459 | 1e-32 | 114.5 | RNA polymerase Rpb1, domain 1 |
XP_057783814.1 |
Pfam | PF00623 |
RNA_pol_Rpb1_2 | Domain | 462 | 646 | 1.2e-57 | 195.5 | RNA polymerase Rpb1, domain 2 |
XP_057783814.1 |
Pfam | PF04983 |
RNA_pol_Rpb1_3 | Domain | 650 | 847 | 3.8e-30 | 105.6 | RNA polymerase Rpb1, domain 3 |
XP_057783814.1 |
Pfam | PF05000 |
RNA_pol_Rpb1_4 | Domain | 899 | 1000 | 1e-20 | 74.3 | RNA polymerase Rpb1, domain 4 |
XP_057783814.1 |
Pfam | PF04998 |
RNA_pol_Rpb1_5 | Domain | 1007 | 1629 | 5e-82 | 276.1 | RNA polymerase Rpb1, domain 5 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。