当前解析结果
SmilChr01G004339| 统一新 Gene ID | SmilChr01G004339 |
|---|---|
| 名称 | SmilChr01G004339 |
| 描述 | putative elongation factor TypA-like SVR3, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61558126 - 61563360 / - |
| NCBI Gene ID | LOC131002419 |
|---|---|
| GeneID | 131002419 |
| locus_tag | - |
| NCBI Name | LOC131002419 |
| 原始查询 | SmilChr01G004339 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative elongation factor TypA-like SVR3, chloroplastic |
| 产物 | putative elongation factor TypA-like SVR3%2C chloroplastic |
| Arabidopsis | AT5G13650 (SVR3)elongation factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:831209] identity=83.8; qcov=0.912; evalue=0; confidence=high |
| Rice | Os02g0285800- identity=78.3; qcov=0.898; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005829 (cytosol); GO:1990904 (ribonucleoprotein complex) |
| KEGG | - |
| Pfam | PF00009 (GTP_EFTU); PF00679 (EFG_C); PF01926 (MMR_HSR1); PF03144 (GTP_EFTU_D2); PF21018 (BipA_C); PF22042 (EF-G_D2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002419 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057784907.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057784907.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784907.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784907.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784907.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61558535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:61558751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C25,D4 |
Chr1:61559139 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C25,D4 |
Chr1:61560146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:61561625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:61561635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr1:61561656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B28 |
Chr1:61561690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,C31 |
Chr1:61562231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C25,D4,D7 |
Chr1:61562387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr1:61562391 |
C |
CA |
1bp_insertion | frameshift_variant | 16 | A20,B10,B101,B108,B124,B136,B140,B21,B39,B66,B89,C23,C55,C68,C84,D6 |
Chr1:61562392 |
G |
GA |
1bp_insertion | frameshift_variant | 8 | A19,B107,B15,B24,B83,B86,C21,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784907.1PF00009
GTP_EFTU 88-279 aa
PF01926
MMR_HSR1 92-213 aa
PF22042
EF-G_D2 296-374 aa
PF03144
GTP_EFTU_D2 304-374 aa
PF00679
EFG_C 480-566 aa
PF21018
BipA_C 571-674 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784907.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 88 | 279 | 4.4e-53 | 180.4 | Elongation factor Tu GTP binding domain |
XP_057784907.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 92 | 213 | 2.4e-06 | 28.3 | 50S ribosome-binding GTPase |
XP_057784907.1 |
Pfam | PF22042 |
EF-G_D2 | Domain | 296 | 374 | 6.2e-08 | 33.4 | Elongation factor G domain 2 |
XP_057784907.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 304 | 374 | 1.6e-11 | 45.1 | Elongation factor Tu domain 2 |
XP_057784907.1 |
Pfam | PF00679 |
EFG_C | Domain | 480 | 566 | 7.8e-21 | 74.6 | Elongation factor G C-terminus |
XP_057784907.1 |
Pfam | PF21018 |
BipA_C | Domain | 571 | 674 | 7.6e-39 | 132.6 | TypA/BipA C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。