当前解析结果
SmilChr01G004341| 统一新 Gene ID | SmilChr01G004341 |
|---|---|
| 名称 | SmilChr01G004341 |
| 描述 | RING-H2 finger protein ATL79-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61582707 - 61585261 / + |
| NCBI Gene ID | LOC131002314 |
|---|---|
| GeneID | 131002314 |
| locus_tag | - |
| NCBI Name | LOC131002314 |
| 原始查询 | SmilChr01G004341 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL79-like |
| 产物 | RING-H2 finger protein ATL79-like |
| Arabidopsis | AT4G17245 (AT4G17245)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827437] identity=46.8; qcov=0.732; evalue=2.91e-39; confidence=medium |
| Rice | Os04g0419550- identity=44.6; qcov=0.684; evalue=7.42e-31; confidence=medium |
| GO | GO:0016567 (protein ubiquitination); GO:0016740 (transferase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002314 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057784794.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057784794.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057784794.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057784794.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057784794.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61584439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:61584459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:61584466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr1:61584504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr1:61584514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B27,B38,B39,C13 |
Chr1:61584534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr1:61584621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C80,C84 |
Chr1:61584727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:61584738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
Chr1:61584792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C37,C63,D9 |
Chr1:61584922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C57 |
Chr1:61584942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B98,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784794.1PF17123
zf-RING_11 133-162 aa
PF13923
zf-C3HC4_2 133-175 aa
PF13639
zf-RING_2 133-176 aa
PF00097
zf-C3HC4 134-175 aa
PF12678
zf-rbx1 147-176 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784794.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 133 | 162 | 3.4e-09 | 36.9 | RING-like zinc finger |
XP_057784794.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 133 | 175 | 2.4e-06 | 27.9 | Zinc finger, C3HC4 type (RING finger) |
XP_057784794.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 133 | 176 | 3.7e-13 | 50.2 | Ring finger domain |
XP_057784794.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 134 | 175 | 5e-06 | 27.0 | Zinc finger, C3HC4 type (RING finger) |
XP_057784794.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 147 | 176 | 4.5e-08 | 33.9 | RING-H2 zinc finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。