Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004344`

染色体: Chr01 坐标: 61602473-61607878 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004344`
名称	SmilChr01G004344
描述	magnesium-chelatase subunit ChlH, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61602473 - 61607878 / `-`

ID 对照

NCBI Gene ID	`LOC131001440`
GeneID	`131001440`
locus_tag	`-`
NCBI Name	`LOC131001440`
原始查询	`SmilChr01G004344`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	magnesium-chelatase subunit ChlH, chloroplastic
产物	magnesium-chelatase subunit ChlH%2C chloroplastic
Arabidopsis	`AT5G13630` (GUN5) magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) [Source:NCBI gene (formerly Entrezgene);Acc:831207] identity=86; qcov=1; evalue=0; confidence=high
Rice	`Os03g0323200` (OsChlH) - identity=83.7; qcov=1.01; evalue=0; confidence=high
GO	GO:0009507 (chloroplast); GO:0015995 (chlorophyll biosynthetic process); GO:0016851 (magnesium chelatase activity)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02514 (CobN-Mg_chel); PF11965 (DUF3479)
InterPro	-
eggNOG	-
NR	GeneID:131001440

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783825.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057783825.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057783825.1`
4	Chloroplast thylakoid	类囊体	0.20000	`XP_057783825.1`
5	Nucleus	细胞核	0.00000	`XP_057783825.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61602844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr1:61602878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B32,C39,C52,D11
`Chr1:61602919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B17,B54,C73
`Chr1:61603131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr1:61603185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B78,C5
`Chr1:61603206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:61603254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:61603314`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:61603326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,B31,C47
`Chr1:61603426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:61603542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B2,C80,C84
`Chr1:61603725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C37,C49,C63,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783825.1

1377 aa

688

1377

DUF3479

CobN-Mg_chel

PF11965 DUF3479 75-236 aa PF02514 CobN-Mg_chel 240-1357 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783825.1`	Pfam	`PF11965`	DUF3479	Family	75	236	1.5e-49	168.9	Domain of unknown function (DUF3479)
`XP_057783825.1`	Pfam	`PF02514`	CobN-Mg_chel	Family	240	1357	0	1231.2	CobN/Magnesium Chelatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927842.1
TGTTGTGAAAATATTATACTGGGAATCTGCCATTGAAACACAAAATATCAAATCCTTTTCAAGGAGGGTCACAAACTCGTAGATAATAGCCAAAAAAGAAAAAAGGCACTCATAAAACAGTGACGTATACAAAATCTCACACTCTATCTCCTCATTCTCTCTCTCTCTCATCATCCACATTTTCTAACCTCTCTCTCTCTCTGCAATTCGACGAAATCCAGCTCGACCAATCAGAGCTCGAGGAACTTCATCATAAATTG...

CDS

1 records

下载 CDS FASTA

LOC131001440
ATGGCGTCTTTGGTTTCATCGCCATTCACACTCCCAAGCTCCAAAGCGGTAAACCTCTCTTCCCTCTCACAAAAGAAGTACCTCCTCCACTCCTTCCTCCCCAAGAGAAGCACCAAAACCAACCAGAAATTCAAATGCACCGCCATTGGCAACGGCCTCTTCACGCAGACCACGCAGGAAGTCCGCAGAATCGTGCCCGAGAAGTCGAACCTCACCACAGTGAAGGTCGTCTACGTGGTCCTCGAAGCTCAGTACCAATC...

Protein

1 records

下载 Protein FASTA

XP_057783825.1
MASLVSSPFTLPSSKAVNLSSLSQKKYLLHSFLPKRSTKTNQKFKCTAIGNGLFTQTTQEVRRIVPEKSNLTTVKVVYVVLEAQYQSSLSAAVQSLNKSNEHASFELVGYLVEELRDENNYNSLCKDLEDANIFIGSLIFVEELALKVKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKGKSNAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLMNFLKMISGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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