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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004352

染色体: Chr01 坐标: 61717133-61720032 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004352
名称SmilChr01G004352
描述pentatricopeptide repeat-containing protein At1g79540
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向61717133 - 61720032 / -

ID 对照

NCBI Gene IDLOC131001558
GeneID131001558
locus_tag-
NCBI NameLOC131001558
原始查询SmilChr01G004352

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g79540
产物pentatricopeptide repeat-containing protein At1g79540
ArabidopsisAT1G79540 (AT1G79540)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844292]
identity=46.4; qcov=0.976; evalue=0; confidence=high
RiceOs09g0110200
-
identity=41.1; qcov=0.916; evalue=1.06e-180; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131001558

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057784003.1
2 Chloroplast 叶绿体 0.20000 XP_057784003.1
3 Nucleus 细胞核 0.00000 XP_057784003.1
4 Chromosome 染色体 0.00000 XP_057784003.1
5 Centromere 着丝粒 0.00000 XP_057784003.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:61717510 C T EMS_canonical_SNV CDS_variant 1 B24
Chr1:61717561 C T EMS_canonical_SNV CDS_variant 2 B108,C23
Chr1:61717618 G A EMS_canonical_SNV CDS_variant 1 B28
Chr1:61717726 C T EMS_canonical_SNV CDS_variant 1 A13
Chr1:61717737 C T EMS_canonical_SNV CDS_variant 2 B94,C59
Chr1:61718595 AC A 1bp_deletion frameshift_variant 1 C2
Chr1:61718595 AC A 1bp_deletion CDS_variant 1 C2
Chr1:61718624 G A EMS_canonical_SNV CDS_variant 1 B128
Chr1:61718626 G A EMS_canonical_SNV CDS_variant 2 B65,C52
Chr1:61718703 C T EMS_canonical_SNV CDS_variant 1 C44
Chr1:61718734 G A EMS_canonical_SNV CDS_variant 4 B130,B131,B83,D11
Chr1:61718800 C T EMS_canonical_SNV CDS_variant 2 B84,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784003.1
805 aa
N
1
402
805
PPR_3
PPR
PPR_2
TPR_24
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
C
PF13812 PPR_3 123-183 aa PF01535 PPR 142-168 aa PF13041 PPR_2 170-219 aa PF23276 TPR_24 175-287 aa PF17177 PPR_long 188-299 aa PF12854 PPR_1 209-234 aa PF01535 PPR 209-238 aa PF13041 PPR_2 209-254 aa PF13812 PPR_3 229-286 aa PF12854 PPR_1 236-269 aa PF01535 PPR 243-273 aa PF23276 TPR_24 244-337 aa PF13041 PPR_2 245-289 aa PF12854 PPR_1 272-301 aa PF01535 PPR 279-307 aa PF13041 PPR_2 314-357 aa PF01535 PPR 315-342 aa PF13812 PPR_3 334-392 aa PF12854 PPR_1 342-373 aa PF13041 PPR_2 345-394 aa PF01535 PPR 348-378 aa PF12854 PPR_1 376-404 aa PF01535 PPR 384-404 aa PF13812 PPR_3 407-460 aa PF12854 PPR_1 414-444 aa PF13041 PPR_2 415-464 aa PF01535 PPR 419-448 aa PF12854 PPR_1 447-479 aa PF01535 PPR 453-479 aa PF13041 PPR_2 511-547 aa PF13812 PPR_3 522-568 aa PF12854 PPR_1 530-560 aa PF13041 PPR_2 533-580 aa PF01535 PPR 537-565 aa PF13812 PPR_3 556-612 aa PF01535 PPR 571-601 aa
XP_057784012.1
777 aa
N
1
388
777
PPR_3
PPR
PPR_2
TPR_24
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
C
PF13812 PPR_3 123-183 aa PF01535 PPR 142-168 aa PF13041 PPR_2 170-219 aa PF23276 TPR_24 175-287 aa PF17177 PPR_long 188-300 aa PF12854 PPR_1 209-234 aa PF01535 PPR 209-238 aa PF13041 PPR_2 209-254 aa PF13812 PPR_3 229-286 aa PF12854 PPR_1 236-269 aa PF01535 PPR 243-273 aa PF13041 PPR_2 243-289 aa PF23276 TPR_24 244-337 aa PF12854 PPR_1 272-301 aa PF01535 PPR 279-307 aa PF13041 PPR_2 314-357 aa PF01535 PPR 315-342 aa PF13812 PPR_3 334-392 aa PF12854 PPR_1 342-373 aa PF13041 PPR_2 345-394 aa PF01535 PPR 348-378 aa PF12854 PPR_1 376-404 aa PF01535 PPR 384-404 aa PF13812 PPR_3 407-460 aa PF12854 PPR_1 414-444 aa PF13041 PPR_2 415-464 aa PF01535 PPR 419-448 aa PF12854 PPR_1 447-479 aa PF01535 PPR 453-479 aa PF13041 PPR_2 511-547 aa PF13812 PPR_3 522-568 aa PF12854 PPR_1 530-560 aa PF13041 PPR_2 533-580 aa PF01535 PPR 537-565 aa PF13812 PPR_3 556-612 aa PF01535 PPR 571-601 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784003.1 Pfam PF13812 PPR_3 Repeat 123 183 4.7e-55 184.3 Pentatricopeptide repeat domain
XP_057784003.1 Pfam PF01535 PPR Repeat 142 168 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 170 219 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF23276 TPR_24 Repeat 175 287 3.2e-34 118.4 Pentatricopeptide repeat-containing protein
XP_057784003.1 Pfam PF17177 PPR_long Repeat 188 299 7.2e-26 91.6 Pentacotripeptide-repeat region of PRORP
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 209 234 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF01535 PPR Repeat 209 238 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 209 254 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF13812 PPR_3 Repeat 229 286 4.7e-55 184.3 Pentatricopeptide repeat domain
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 236 269 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF01535 PPR Repeat 243 273 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF23276 TPR_24 Repeat 244 337 3.2e-34 118.4 Pentatricopeptide repeat-containing protein
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 245 289 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 272 301 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF01535 PPR Repeat 279 307 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 314 357 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF01535 PPR Repeat 315 342 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF13812 PPR_3 Repeat 334 392 4.7e-55 184.3 Pentatricopeptide repeat domain
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 342 373 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 345 394 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF01535 PPR Repeat 348 378 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 376 404 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF01535 PPR Repeat 384 404 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF13812 PPR_3 Repeat 407 460 4.7e-55 184.3 Pentatricopeptide repeat domain
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 414 444 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 415 464 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF01535 PPR Repeat 419 448 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 447 479 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF01535 PPR Repeat 453 479 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 511 547 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF13812 PPR_3 Repeat 522 568 4.7e-55 184.3 Pentatricopeptide repeat domain
XP_057784003.1 Pfam PF12854 PPR_1 Repeat 530 560 2.2e-112 367.1 PPR repeat
XP_057784003.1 Pfam PF13041 PPR_2 Repeat 533 580 7e-116 379.0 PPR repeat family
XP_057784003.1 Pfam PF01535 PPR Repeat 537 565 4.1e-90 290.7 PPR repeat
XP_057784003.1 Pfam PF13812 PPR_3 Repeat 556 612 4.7e-55 184.3 Pentatricopeptide repeat domain
XP_057784003.1 Pfam PF01535 PPR Repeat 571 601 4.1e-90 290.7 PPR repeat
XP_057784012.1 Pfam PF13812 PPR_3 Repeat 123 183 4.3e-55 184.4 Pentatricopeptide repeat domain
XP_057784012.1 Pfam PF01535 PPR Repeat 142 168 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 170 219 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF23276 TPR_24 Repeat 175 287 2.7e-34 118.7 Pentatricopeptide repeat-containing protein
XP_057784012.1 Pfam PF17177 PPR_long Repeat 188 300 8.6e-26 91.3 Pentacotripeptide-repeat region of PRORP
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 209 234 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF01535 PPR Repeat 209 238 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 209 254 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF13812 PPR_3 Repeat 229 286 4.3e-55 184.4 Pentatricopeptide repeat domain
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 236 269 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF01535 PPR Repeat 243 273 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 243 289 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF23276 TPR_24 Repeat 244 337 2.7e-34 118.7 Pentatricopeptide repeat-containing protein
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 272 301 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF01535 PPR Repeat 279 307 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 314 357 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF01535 PPR Repeat 315 342 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13812 PPR_3 Repeat 334 392 4.3e-55 184.4 Pentatricopeptide repeat domain
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 342 373 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 345 394 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF01535 PPR Repeat 348 378 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 376 404 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF01535 PPR Repeat 384 404 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13812 PPR_3 Repeat 407 460 4.3e-55 184.4 Pentatricopeptide repeat domain
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 414 444 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 415 464 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF01535 PPR Repeat 419 448 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 447 479 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF01535 PPR Repeat 453 479 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 511 547 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF13812 PPR_3 Repeat 522 568 4.3e-55 184.4 Pentatricopeptide repeat domain
XP_057784012.1 Pfam PF12854 PPR_1 Repeat 530 560 5.3e-111 362.7 PPR repeat
XP_057784012.1 Pfam PF13041 PPR_2 Repeat 533 580 2.8e-121 396.2 PPR repeat family
XP_057784012.1 Pfam PF01535 PPR Repeat 537 565 1.3e-88 286.0 PPR repeat
XP_057784012.1 Pfam PF13812 PPR_3 Repeat 556 612 4.3e-55 184.4 Pentatricopeptide repeat domain
XP_057784012.1 Pfam PF01535 PPR Repeat 571 601 1.3e-88 286.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928029.1
AAACTTAAAATTTCAAGTGAAAATAAACCAATCCATCCTCTCCCACACAAACACAAAATCGTTACGATGTTTTATTTAAATTAATAAAATCGTCAAAAGTCGTTACTGCAATGGATCCACCACTGAAAATTTGGTAATTCAGGCTTCATAACTTCCGCCCACCGCCGCCGCCGCACCTCCGACTGAAAACCCTGCTAAAACCCAGATCAAACGGTTACCATATGTGGTAACGAACATGAATATTCAATCTTCTCCACCAC...
XM_057928020.1
AATTTCAAGTGAAAATAAACCAATCCATCCTCTCCCACACAAACACAAAATCGTTACGATGTTTTATTTAAATTAATAAAATCGTCAAAAGTCGTTACTGCAATGGATCCACCACTGAAAATTTGGTAATTCAGGCTTCATAACTTCCGCCCACCGCCGCCGCCGCACCTCCGACTGAAAACCCTGCTAAAACCCAGATCAAACGGTTACCATATGTGGTAACGAACATGAATATTCAATCTTCTCCACCACCATTATGC...

CDS

2 records

下载 CDS FASTA
LOC131001558
ATGCAGAAATTCCTTCATTCCCAAATCTTTCGTGCAATCAGACCCCAAAACTTCACTGCGAAATCCAACTTCTCTTCATTTCCCGACGATGCCCTCGAAGATTCCATCTCCAACAAAGTGCTCGCCCTCATAAATTCTGCACGCCCCATCGAGCCCGCTCTCGCCGAGCTATCCCCGTCGCTCAATCGCGAAGTCGTTATTTCAGTCCTCCAATCCCAGGCCCAACTGAAGAAGGACCCGGTGATTGGCTTCCGATTCTT...
LOC131001558
ATGCAGAAATTCCTTCATTCCCAAATCTTTCGTGCAATCAGACCCCAAAACTTCACTGCGAAATCCAACTTCTCTTCATTTCCCGACGATGCCCTCGAAGATTCCATCTCCAACAAAGTGCTCGCCCTCATAAATTCTGCACGCCCCATCGAGCCCGCTCTCGCCGAGCTATCCCCGTCGCTCAATCGCGAAGTCGTTATTTCAGTCCTCCAATCCCAGGCCCAACTGAAGAAGGACCCGGTGATTGGCTTCCGATTCTT...

Protein

2 records

下载 Protein FASTA
XP_057784003.1
MQKFLHSQIFRAIRPQNFTAKSNFSSFPDDALEDSISNKVLALINSARPIEPALAELSPSLNREVVISVLQSQAQLKKDPVIGFRFFIWASDTARLRSSFSNKLMVDILLSGGNVNSLDLCWSVLDELRNENMSISANAFAVLILGYWRLGNAEKAVDAFGRMKDYDCEPNLFACNVILHVLVQKNVILLALAVYNMMLKSNIDMGCDTFNVLIDGLCKNEMTEAALNLFDEMTSRGILPNRITYTVVISGLCKTKRVSD...
XP_057784012.1
MQKFLHSQIFRAIRPQNFTAKSNFSSFPDDALEDSISNKVLALINSARPIEPALAELSPSLNREVVISVLQSQAQLKKDPVIGFRFFIWASDTARLRSSFSNKLMVDILLSGGNVNSLDLCWSVLDELRNENMSISANAFAVLILGYWRLGNAEKAVDAFGRMKDYDCEPNLFACNVILHVLVQKNVILLALAVYNMMLKSNIDMGCDTFNVLIDGLCKNEMTEAALNLFDEMTSRGILPNRITYTVVISGLCKTKRVSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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