当前解析结果
SmilChr01G004369| 统一新 Gene ID | SmilChr01G004369 |
|---|---|
| 名称 | SmilChr01G004369 |
| 描述 | zeatin O-glucosyltransferase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61873944 - 61875652 / + |
| NCBI Gene ID | LOC131001873 |
|---|---|
| GeneID | 131001873 |
| locus_tag | - |
| NCBI Name | LOC131001873 |
| 原始查询 | SmilChr01G004369 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zeatin O-glucosyltransferase-like |
| 产物 | zeatin O-glucosyltransferase-like |
| Arabidopsis | AT2G36780 (AT2G36780)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818250] identity=29.3; qcov=1.01; evalue=1.49e-59; confidence=low |
| Rice | Os04g0556500 (CZOGT1)- identity=41.6; qcov=0.985; evalue=5.95e-105; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001873 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057784491.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057784491.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784491.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784491.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784491.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61874106 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr1:61874152 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C24 |
Chr1:61874152 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C24 |
Chr1:61874262 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A3 |
Chr1:61874262 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A3 |
Chr1:61874445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C41 |
Chr1:61874459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B140,B55,C83 |
Chr1:61874481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:61874526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B63,B76,C2,C53,C84 |
Chr1:61874608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:61874647 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr1:61874647 |
TG |
T |
1bp_deletion | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784491.1PF26168
Glyco_transf_N 19-250 aa
PF00201
UDPGT 264-400 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784491.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 19 | 250 | 1.1e-81 | 274.9 | Glycosyltransferase, N-terminal domain |
XP_057784491.1 |
Pfam | PF00201 |
UDPGT | Family | 264 | 400 | 1e-18 | 68.2 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。