Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004377`

染色体: Chr01 坐标: 61971157-61977289 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004377`
名称	SmilChr01G004377
描述	putative calcium-transporting ATPase 11, plasma membrane-type
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61971157 - 61977289 / `+`

ID 对照

NCBI Gene ID	`LOC131001500`
GeneID	`131001500`
locus_tag	`-`
NCBI Name	`LOC131001500`
原始查询	`SmilChr01G004377`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative calcium-transporting ATPase 11, plasma membrane-type
产物	putative calcium-transporting ATPase 11%2C plasma membrane-type
Arabidopsis	`AT3G57330` (ACA11) autoinhibited Ca2+-ATPase 11 [Source:NCBI gene (formerly Entrezgene);Acc:824900] identity=66.4; qcov=0.998; evalue=0; confidence=high
Rice	`Os12g0136900` (osACA5) - identity=65.8; qcov=1; evalue=0; confidence=high
GO	GO:0005388 (P-type calcium transporter activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport)
KEGG	-
Pfam	PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF12515 (CaATP_NAI); PF13246 (Cation_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:131001500

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057783875.1`
2	Vacuole	液泡	0.60000	`XP_057783875.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057783875.1`
4	Vacuole membrane	液泡膜	0.20000	`XP_057783875.1`
5	Nucleus	细胞核	0.00000	`XP_057783875.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61971443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:61973970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr1:61974141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:61974267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:61974312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C2,C68
`Chr1:61974514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:61975742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:61977001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B55,B66,B97,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783875.1

1049 aa

524

1049

CaATP_NAI

Cation_ATPase_N

E1-E2_ATPase

Cation_ATPase

Hydrolase

Cation_ATPase_C

PF12515 CaATP_NAI 8-50 aa PF00690 Cation_ATPase_N 132-198 aa PF00122 E1-E2_ATPase 253-347 aa PF13246 Cation_ATPase 517-673 aa PF00702 Hydrolase 646-780 aa PF00689 Cation_ATPase_C 851-1023 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783875.1`	Pfam	`PF12515`	CaATP_NAI	Family	8	50	8.3e-17	61.2	Ca2+-ATPase N terminal autoinhibitory domain
`XP_057783875.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	132	198	1.6e-15	57.2	Cation transporter/ATPase, N-terminus
`XP_057783875.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	253	347	8.4e-22	77.6	P-type ATPase actuator domain
`XP_057783875.1`	Pfam	`PF13246`	Cation_ATPase	Family	517	673	5.5e-33	115.0	P-type ATPase, cytoplasmic domain N
`XP_057783875.1`	Pfam	`PF00702`	Hydrolase	Domain	646	780	1.3e-15	59.0	haloacid dehalogenase-like hydrolase
`XP_057783875.1`	Pfam	`PF00689`	Cation_ATPase_C	Family	851	1023	2.1e-45	155.3	Cation transporting ATPase, C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927892.1
TAAGTTTCTACCAATAAAAGGGGCGGAGCGATATCCGGGTACTGAATCATCACTCCTCTCCTGTCTTCTACTTCTCTCACTTCCCCCACTACTCTGTGTATTGTGTGCGTATGCATACGTATTGATCGTGGCCGAACCCTGAGAGCAATCTAATCTCTCATGGACAATTTTATACCAGCGGAGTTCGATTTGGACAACAAGGATAGGTCGGATGAGGCGCTGAAGAAGTGGCGGCAAGCCGTAGGGACGCTGGTGAAGAA...

CDS

1 records

下载 CDS FASTA

LOC131001500
ATGGACAATTTTATACCAGCGGAGTTCGATTTGGACAACAAGGATAGGTCGGATGAGGCGCTGAAGAAGTGGCGGCAAGCCGTAGGGACGCTGGTGAAGAACCGGCGGAGAAGGTTCCGGTACGCCGCCGATCTTGAGAAGCGATCCGAAGCCAAGGAGCAGCTCAAGAGACTCAGTGAAAAGATTCGTATTTCTTTCCTTACTCTAACGGCAGCCCTCAGGTTTCTTAACGGTGCACCTATTAAAAAAACTCATCCTGA...

Protein

1 records

下载 Protein FASTA

XP_057783875.1
MDNFIPAEFDLDNKDRSDEALKKWRQAVGTLVKNRRRRFRYAADLEKRSEAKEQLKRLSEKIRISFLTLTAALRFLNGAPIKKTHPEPSEEDIEKDIQNGLQEEAKLAGFKIHPDKLGSLVASYDIKTLTKLKGADGLADRLNVSLEKGVNSTDVPARQNIYGVNRYTEKPSKGFWVFVWEALHDLTLIILIVCAVVSIGVGLATEGWPKGTYDGLGIIVSILLVVMVTAISDYKQSLQFKELDKEKKKIFINVTRDGVR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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