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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004381

染色体: Chr01 坐标: 62000061-62002883 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004381
名称SmilChr01G004381
描述probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向62000061 - 62002883 / +

ID 对照

NCBI Gene IDLOC131001721
GeneID131001721
locus_tag-
NCBI NameLOC131001721
原始查询SmilChr01G004381

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
产物probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1%2C cytosolic
ArabidopsisAT2G41540 (GPDHC1)
6-phosphogluconate dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818752]
identity=81; qcov=0.988; evalue=0; confidence=high
RiceOs01g0939600 (GPDH2)
-
identity=84.2; qcov=0.984; evalue=0; confidence=high
GOGO:0005829 (cytosol); GO:0005975 (carbohydrate metabolic process); GO:0006116 (GO:0006116); GO:0009331 (glycerol-3-phosphate dehydrogenase (FAD) complex); GO:0046168 (glycerol-3-phosphate catabolic process); GO:0047952 (glycerol-3-phosphate dehydrogenase [NAD(P)+] activity); GO:0051287 (NAD binding)
KEGGsmil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF01210 (NAD_Gly3P_dh_N); PF07479 (NAD_Gly3P_dh_C)
InterPro-
eggNOG-
NRGeneID:131001721

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057784274.1
2 Cytoplasm 细胞质 0.80000 XP_057784279.1
3 Nucleoplasm 核质 0.20000 XP_057784310.1
4 Nucleus 细胞核 0.00000 XP_057784274.1
5 Chromosome 染色体 0.00000 XP_057784274.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:62001094 G A EMS_canonical_SNV CDS_variant 1 B36
Chr1:62001229 CA C 1bp_deletion frameshift_variant 88 A1,A14,A16,A19,A20,A21,A22,A25,A3,A5,A7,B10,B102,B104,B110,B114,B120,B121,B124,B125,B127,B130,B132,B134,B136,B14,B28,B3,B34,B35,B36,B38,B39,B40,B43,B55,B59,B6,B60,B62,B63,B65,B66,B69,B74,B75,B76,B78,B8,B84,B86,B88,B90,B94,B98,C1,C12,C13,C18,C19,C21,C23,C24,C3,C31,C32,C35,C36,C37,C38,C4,C41,C44,C5,C52,C54,C64,C65,C7,C70,C77,C81,C86,C87,D1,D4,D6,D9
Chr1:62001232 C CG 1bp_insertion frameshift_variant 93 A1,A14,A16,A19,A20,A21,A22,A25,A3,A5,A6,A7,B10,B102,B104,B110,B114,B120,B121,B124,B125,B127,B130,B132,B134,B136,B14,B25,B28,B3,B34,B35,B36,B38,B39,B40,B43,B45,B55,B59,B6,B60,B62,B63,B64,B65,B66,B69,B75,B76,B78,B8,B84,B86,B87,B88,B90,B94,B98,C1,C12,C13,C18,C19,C21,C23,C24,C3,C31,C32,C35,C36,C37,C38,C4,C41,C44,C5,C52,C54,C64,C65,C7,C70,C77,C81,C82,C86,C87,D1,D4,D6,D9
Chr1:62001238 GCA G 2bp_deletion frameshift_variant 94 A1,A14,A16,A19,A20,A21,A22,A25,A3,A5,A6,A7,B10,B102,B104,B110,B114,B12,B120,B121,B124,B125,B127,B130,B132,B134,B136,B14,B28,B3,B34,B35,B36,B37,B38,B39,B43,B55,B59,B6,B60,B62,B63,B65,B66,B69,B75,B76,B78,B8,B84,B86,B87,B88,B90,B94,B98,C1,C12,C13,C18,C19,C21,C23,C24,C3,C31,C32,C35,C36,C37,C38,C4,C41,C44,C5,C50,C52,C54,C64,C65,C7,C70,C73,C74,C77,C81,C86,C87,D1,D3,D4,D6,D9
Chr1:62001241 G GGT 2bp_insertion frameshift_variant 102 A1,A14,A16,A19,A20,A21,A22,A25,A3,A5,A6,A7,A8,B10,B102,B104,B107,B110,B114,B12,B120,B121,B124,B127,B130,B132,B134,B136,B14,B25,B28,B3,B34,B35,B36,B37,B38,B39,B40,B43,B45,B55,B59,B6,B60,B62,B63,B64,B65,B66,B69,B75,B76,B78,B8,B84,B86,B87,B88,B90,B92,B94,B98,C1,C12,C13,C18,C19,C21,C23,C24,C3,C31,C32,C35,C36,C37,C38,C4,C41,C44,C5,C50,C52,C53,C54,C59,C64,C65,C7,C70,C73,C74,C77,C81,C86,C87,D1,D3,D4,D6,D9
Chr1:62001292 C T EMS_canonical_SNV CDS_variant 1 A7
Chr1:62001295 C T EMS_canonical_SNV CDS_variant 1 A7
Chr1:62001313 C T EMS_canonical_SNV CDS_variant 2 A7,B24
Chr1:62001314 C T EMS_canonical_SNV CDS_variant 2 A7,B24
Chr1:62001349 G A EMS_canonical_SNV CDS_variant 1 B24
Chr1:62001553 GAC G 2bp_deletion frameshift_variant 164 A1,A10,A11,A13,A14,A15,A16,A2,A21,A23,A25,A4,A5,A6,A7,B100,B101,B102,B103,B105,B107,B108,B11,B110,B112,B113,B117,B119,B12,B120,B121,B122,B124,B125,B126,B127,B128,B13,B130,B131,B133,B134,B135,B136,B137,B138,B140,B17,B19,B2,B24,B26,B27,B3,B30,B31,B33,B35,B37,B39,B4,B40,B42,B44,B45,B46,B47,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B60,B64,B66,B69,B70,B72,B73,B74,B75,B76,B78,B8,B80,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B98,C1,C10,C12,C13,C14,C15,C17,C18,C19,C20,C27,C28,C29,C3,C31,C34,C35,C4,C42,C44,C46,C49,C5,C50,C51,C54,C55,C56,C57,C58,C59,C6,C62,C63,C64,C65,C66,C67,C7,C71,C72,C73,C74,C75,C76,C77,C78,C8,C80,C83,C86,C87,C9,D1,D2,D5,D6,D8,D9
Chr1:62001560 G GGC 2bp_insertion frameshift_variant 139 A1,A10,A11,A13,A14,A16,A2,A21,A23,A25,A5,A6,B100,B101,B102,B103,B105,B107,B108,B11,B112,B117,B119,B12,B120,B121,B122,B124,B126,B127,B13,B130,B131,B133,B135,B136,B138,B140,B17,B2,B26,B27,B3,B30,B31,B33,B35,B37,B39,B4,B40,B45,B46,B48,B49,B5,B50,B51,B52,B53,B56,B57,B58,B59,B60,B64,B66,B69,B70,B72,B73,B75,B76,B78,B8,B80,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B94,B96,B98,C1,C10,C12,C13,C14,C15,C17,C18,C20,C27,C28,C29,C3,C34,C4,C42,C44,C46,C49,C5,C50,C51,C54,C55,C56,C57,C58,C59,C6,C63,C64,C65,C66,C67,C7,C72,C73,C76,C77,C78,C8,C80,C83,C87,C9,D1,D2,D6,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784274.1
495 aa
N
1
248
495
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-414 aa
XP_057784279.1
471 aa
N
1
236
471
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-425 aa
XP_057784283.1
471 aa
N
1
236
471
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-425 aa
XP_057784290.1
471 aa
N
1
236
471
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-425 aa
XP_057784299.1
471 aa
N
1
236
471
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-425 aa
XP_057784303.1
455 aa
N
1
228
455
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-247 aa PF07479 NAD_Gly3P_dh_C 275-367 aa
XP_057784310.1
431 aa
N
1
216
431
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-420 aa
XP_057784316.1
431 aa
N
1
216
431
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-420 aa
XP_057784323.1
431 aa
N
1
216
431
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-420 aa
XP_057784334.1
431 aa
N
1
216
431
NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
C
PF01210 NAD_Gly3P_dh_N 147-248 aa PF07479 NAD_Gly3P_dh_C 275-420 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784274.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 3.7e-14 53.7 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784274.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 414 5.7e-15 56.5 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784279.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 3.4e-14 53.8 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784279.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 425 3e-18 67.1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784283.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 3.4e-14 53.8 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784283.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 425 3e-18 67.1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784290.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 3.4e-14 53.8 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784290.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 425 3e-18 67.1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784299.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 3.4e-14 53.8 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784299.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 425 3e-18 67.1 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784303.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 247 2.8e-14 54.1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784303.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 367 8.7e-15 55.9 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784310.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 2.5e-14 54.3 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784310.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 420 4.9e-18 66.4 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784316.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 2.5e-14 54.3 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784316.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 420 4.9e-18 66.4 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784323.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 2.5e-14 54.3 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784323.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 420 4.9e-18 66.4 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
XP_057784334.1 Pfam PF01210 NAD_Gly3P_dh_N Family 147 248 2.5e-14 54.3 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
XP_057784334.1 Pfam PF07479 NAD_Gly3P_dh_C Domain 275 420 4.9e-18 66.4 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA
XM_057928307.1
AACTCAACTGCTTCCATCAATGCCCACTCTCTCTCTACCTTTCTCTCACTATATATACATAACGAAACACCACACACGTTTCTCTGTGTTCCTGTAGTATGAATAGCTGTGACCCCAGAAACAGAATAACTATGAATAATTCATGGGTTGCATGAAATTTCTTTCATTTTTAAAATAGAAACTACATTTTTTAAGTGGGCTCTTGAAGATTTCAGAGTTGTTGAAATTTTCACTCAAGTAAAGTTGCAAAATTTGATCTG...
XM_057928327.1
AACTGCTTCCATCAATGCCCACTCTCTCTCTACCTTTCTCTCACTATATATACATAACGAAACACCACACACGTTTCTCTGTGTTCCTGTAGTATGAATAGCTGTGACCCCAGAAACAGAATAACTATGAATAATTCATGGGTTGCATGAAATTTCTTTCATTTTTAAAATAGAAACTACATTTTTTAAGTGGGCTCTTGAAGATTTCAGAGTTGTTGAAATTTTCACTCAAGTAAAGTTGCAAAATTTGATCTGCTTCT...

CDS

10 records

下载 CDS FASTA
LOC131001721
ATGGTTGGCAGCATTGAGGTTGCAAGCAACTACACTTACTCCAATGGGGTGGTGCAAAGCAGCAACGGCTCCGAGGAGAAGCTAGACGAGCTCCGTAGATACATAGGCAAACCCGATGGCGATCTCTTGAAGATTGTTGGTGTCGGGGGAGGCGCGTGGGGCAGTGTGTTTGCAGCATTGCTTCAAGACAGCTACGGGCAGTACCGGGACAAGGTCCAGATCAGGATATGGAGACGAGCCGGGAGGGCTGTCGACAGAGC...
LOC131001721
ATGGTTGGCAGCATTGAGGTTGCAAGCAACTACACTTACTCCAATGGGGTGGTGCAAAGCAGCAACGGCTCCGAGGAGAAGCTAGACGAGCTCCGTAGATACATAGGCAAACCCGATGGCGATCTCTTGAAGATTGTTGGTGTCGGGGGAGGCGCGTGGGGCAGTGTGTTTGCAGCATTGCTTCAAGACAGCTACGGGCAGTACCGGGACAAGGTCCAGATCAGGATATGGAGACGAGCCGGGAGGGCTGTCGACAGAGC...

Protein

10 records

下载 Protein FASTA
XP_057784274.1
MVGSIEVASNYTYSNGVVQSSNGSEEKLDELRRYIGKPDGDLLKIVGVGGGAWGSVFAALLQDSYGQYRDKVQIRIWRRAGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMIDTPLCPMKVVTNLQEAVWDADIVINGLPSTETREVFEEIRDYWKERITTPVIISLAKGIEAELSPCPRIITPTQMISQGTGVPIENILYLGGPNIASEIYNKEYANARICGSEKWRVALA...
XP_057784279.1
MVGSIEVASNYTYSNGVVQSSNGSEEKLDELRRYIGKPDGDLLKIVGVGGGAWGSVFAALLQDSYGQYRDKVQIRIWRRAGRAVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMIDTPLCPMKVVTNLQEAVWDADIVINGLPSTETREVFEEIRDYWKERITTPVIISLAKGIEAELSPCPRIITPTQMISQGTGVPIENILYLGGPNIASEIYNKEYANARICGSEKWRVALA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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