Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004392`

染色体: Chr01 坐标: 62091011-62093307 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004392`
名称	SmilChr01G004392
描述	protein IQ-DOMAIN 12
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62091011 - 62093307 / `-`

ID 对照

NCBI Gene ID	`LOC131001973`
GeneID	`131001973`
locus_tag	`-`
NCBI Name	`LOC131001973`
原始查询	`SmilChr01G004392`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IQ-DOMAIN 12
产物	protein IQ-DOMAIN 12
Arabidopsis	`AT5G03960` (IQD12) IQ-domain 12 [Source:NCBI gene (formerly Entrezgene);Acc:830275] identity=37.7; qcov=1.05; evalue=5.25e-53; confidence=medium
Rice	`Os03g0355700` - identity=29.2; qcov=0.729; evalue=4.1e-23; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00612 (IQ); PF13178 (DUF4005)
InterPro	-
eggNOG	-
NR	GeneID:131001973

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057784623.1`
2	Nucleus	细胞核	0.80000	`XP_057784623.1`
3	Cell membrane	细胞膜	0.60000	`XP_057784623.1`
4	Nucleus membrane	核膜	0.20000	`XP_057784623.1`
5	Chromosome	染色体	0.00000	`XP_057784623.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62091466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B114,B26,C38,C40,C75
`Chr1:62091648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B38,B39,B70
`Chr1:62092254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr1:62092473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:62092800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784623.1

398 aa

199

398

DUF4005

PF00612 IQ 104-122 aa PF00612 IQ 130-144 aa PF13178 DUF4005 306-381 aa

XP_057784630.1

395 aa

198

395

DUF4005

PF00612 IQ 101-119 aa PF00612 IQ 127-141 aa PF13178 DUF4005 303-378 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784623.1`	Pfam	`PF00612`	IQ	Motif	104	122	5.6e-10	38.8	IQ calmodulin-binding motif
`XP_057784623.1`	Pfam	`PF00612`	IQ	Motif	130	144	5.6e-10	38.8	IQ calmodulin-binding motif
`XP_057784623.1`	Pfam	`PF13178`	DUF4005	Family	306	381	4.4e-10	40.8	Protein of unknown function (DUF4005)
`XP_057784630.1`	Pfam	`PF00612`	IQ	Motif	101	119	5.6e-10	38.8	IQ calmodulin-binding motif
`XP_057784630.1`	Pfam	`PF00612`	IQ	Motif	127	141	5.6e-10	38.8	IQ calmodulin-binding motif
`XP_057784630.1`	Pfam	`PF13178`	DUF4005	Family	303	378	4.3e-10	40.8	Protein of unknown function (DUF4005)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928647.1
GTTAAAACACACTTCATCCCAAGTCACCCCAAAATTGTACTCACAAATTCTTGATAATTGAAAGATCAATAGATAACATACCCCCCACCCACCCACCTTCTACCCCCATTTGTTTTTCTAAAGTTGCTTTCCCAATCACTCTCAATCAGCACATGATATGCTTTTCAAAGCATAACTAAACAAATTGCTGTACATGAAAGCTTAAAAACAGGAAAGCAAGAAAAGCAAGCCATTTTGTACCATCATCATTCAAGAATGAT...

XM_057928640.1
TTCCCAATCACTCTCAATCAGCACATGATATGCTTTTCAAAGCATAACTAAACAAATTGCTGTACATGAAAGCTTAAAAACAGGAAAGCAAGAAAAGCAAGCCATTTTGTACCATCATCATTCAAGAATGATACTCAAACAAAATGTTTGGATATTTTATCAACATGCATGGCTATATAAATTGATTTTCTCACCCCTTTTCTCTGCATGCTTCAAATCCAATTTTCTTGAATCTGGTCTTCCCTGAAAATGGCAGCAGA...

CDS

2 records

下载 CDS FASTA

LOC131001973
ATGGGAAAGAAAAAGTGTTGGCTCACTTATGTGAAGAGGTTCTTCATTCCTGAGCCAAAACCAAAATCTGAAGAGAAATGGAGATGGATATTCAAAAGATTCAAATTCAGACACTATCCTGCAATTGAGGAAGCTCCTGAGAAAGCACTGAGTCATGCAACAGAAGAGCAGAGGAAGCATGCATTAGCTGTCGCCATTGCCACGGCGGCAGCAGCAGACGCCGCTGTGGCTGCAGCCAACGCAGCCGCGGAGGTTGTCCG...

LOC131001973
ATGGGAAAGAAAAAGTGTTGGCTCACTTATGTGAAGAGGTTCTTCATTCCTGAGCCAAAACCAAAATCTGAAGAGAAATCTAAGAAATGGAGATGGATATTCAAAAGATTCAAATTCAGACACTATCCTGCAATTGAGGAAGCTCCTGAGAAAGCACTGAGTCATGCAACAGAAGAGCAGAGGAAGCATGCATTAGCTGTCGCCATTGCCACGGCGGCAGCAGCAGACGCCGCTGTGGCTGCAGCCAACGCAGCCGCGGA...

Protein

2 records

下载 Protein FASTA

XP_057784623.1
MGKKKCWLTYVKRFFIPEPKPKSEEKSKKWRWIFKRFKFRHYPAIEEAPEKALSHATEEQRKHALAVAIATAAAADAAVAAANAAAEVVRLTSAPHSHRLRSQHAAAIRIQSTYRGHLARKALSALRGLVKLQAVIRGELVRRSVVRKLSSMAFLADLKKPRAEKKRVPTLLECLSQSESRHSLGRKEGIKSEEMRLRCSTQRTWDLSLISKDSVEALYLQKQEAIARRERMKQYSFSHRERRNDESLQELMSRKSSRFD...

XP_057784630.1
MGKKKCWLTYVKRFFIPEPKPKSEEKWRWIFKRFKFRHYPAIEEAPEKALSHATEEQRKHALAVAIATAAAADAAVAAANAAAEVVRLTSAPHSHRLRSQHAAAIRIQSTYRGHLARKALSALRGLVKLQAVIRGELVRRSVVRKLSSMAFLADLKKPRAEKKRVPTLLECLSQSESRHSLGRKEGIKSEEMRLRCSTQRTWDLSLISKDSVEALYLQKQEAIARRERMKQYSFSHRERRNDESLQELMSRKSSRFDQYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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