Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004395`

染色体: Chr01 坐标: 62109110-62112274 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004395`
名称	SmilChr01G004395
描述	uncharacterized SmilChr01G004395
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62109110 - 62112274 / `+`

ID 对照

NCBI Gene ID	`LOC131001944`
GeneID	`131001944`
locus_tag	`-`
NCBI Name	`LOC131001944`
原始查询	`SmilChr01G004395`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Source:NCBI gene (formerly Entrezgene);Acc:818747]; symbol=GPT; hit=AT2G41490; species=arabidopsis; confidence=high
产物	UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Source:NCBI gene (formerly Entrezgene);Acc:818747]; symbol=GPT; hit=AT2G41490; species=arabidopsis; confidence=high
Arabidopsis	`AT2G41490` (GPT) UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Source:NCBI gene (formerly Entrezgene);Acc:818747] identity=72.4; qcov=1.03; evalue=0; confidence=high
Rice	`Os07g0661100` (P0496C02.125) - identity=67.8; qcov=0.928; evalue=0; confidence=high
GO	GO:0003975 (UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity); GO:0006487 (protein N-linked glycosylation); GO:0006488 (dolichol-linked oligosaccharide biosynthetic process); GO:0016020 (membrane)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00953 (Glycos_transf_4)
InterPro	-
eggNOG	-
NR	GeneID:131001944

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057784580.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057784585.1`
3	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057784580.1`
4	Vacuole membrane	液泡膜	0.20000	`XP_057784585.1`
5	Nucleus	细胞核	0.00000	`XP_057784580.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62109896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C29
`Chr1:62109954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:62110133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B93,C85
`Chr1:62110327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,A7,B7,C25
`Chr1:62110475`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B91
`Chr1:62110475`	`AT`	`A`	1bp_deletion	CDS_variant	1	B91
`Chr1:62110477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr1:62110506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:62110547`	`CAG`	`C`	2bp_deletion	frameshift_variant	3	B107,C21,C26
`Chr1:62110547`	`CAG`	`C`	2bp_deletion	CDS_variant	3	B107,C21,C26
`Chr1:62110548`	`AG`	`A`	1bp_deletion	frameshift_variant	38	A13,A16,A18,A19,A22,B103,B104,B114,B119,B12,B127,B138,B16,B38,B4,B5,B55,B58,B60,B65,B80,B83,B90,C15,C30,C34,C38,C4,C41,C49,C50,C52,C57,C64,C66,C70,C77,C85
`Chr1:62110549`	`GAC`	`G`	2bp_deletion	frameshift_variant	138	A10,A14,A19,A21,A24,A25,A4,A5,A7,A9,B1,B100,B101,B102,B104,B105,B106,B11,B110,B113,B117,B119,B121,B122,B123,B125,B126,B127,B128,B13,B130,B131,B132,B133,B134,B135,B138,B139,B14,B140,B15,B17,B18,B19,B20,B21,B24,B25,B26,B27,B4,B40,B41,B45,B46,B47,B49,B51,B52,B53,B56,B59,B6,B63,B64,B66,B68,B7,B70,B73,B74,B75,B76,B79,B8,B82,B85,B86,B87,B9,B91,B94,B95,B96,B97,B98,B99,C1,C10,C11,C14,C19,C2,C23,C24,C27,C29,C32,C33,C37,C40,C42,C44,C46,C48,C5,C51,C54,C56,C57,C58,C59,C6,C60,C63,C65,C67,C68,C69,C7,C73,C76,C78,C79,C8,C80,C83,C84,C86,D10,D11,D2,D4,D5,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784580.1

434 aa

217

434

Glycos_transf_4

PF00953 Glycos_transf_4 152-322 aa

XP_057784585.1

418 aa

209

418

Glycos_transf_4

PF00953 Glycos_transf_4 152-322 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784580.1`	Pfam	`PF00953`	Glycos_transf_4	Family	152	322	1.1e-29	104.3	Glycosyl transferase family 4
`XP_057784585.1`	Pfam	`PF00953`	Glycos_transf_4	Family	152	322	9.7e-30	104.4	Glycosyl transferase family 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928602.1
CAGAAAGCCAACTCGTCAATGAAAATTCAGATGCCTGTTGCCACGTCATCATGTATCTATTCGCTCTCAAATCTAAATAGTATATGTATATAGAGAGTAAAAATAAACAAATGTATATATATCATACCTAGAGAGACGGACGCACAAGTGAGTGATCCCCCGGCTTCTAGTTTCAACAATGGCTGCTAGGAAGCGACCTTCAGCATCTGACGCCGCAAAATTTGAACCGGAAAAATCAAGACCCGAGATCCATCAAACGG...

XM_057928597.1
TATATATCATACCTAGAGAGACGGACGCACAAGTGAGTGATCCCCCGGCTTCTAGTTTCAACAATGGCTGCTAGGAAGCGACCTTCAGCATCTGACGCCGCAAAATTTGAACCGGAAAAATCAAGACCCGAGATCCATCAAACGGATTCCCCAATTCGTCCCGCGAAATTCTTCACAATCTCTAAAATCTTCCTCATATTTGCCATCCCATACTTTTTCTTGATTTTCTCTTACTGTAAGATTGAATATGAGCTTAAAAA...

CDS

2 records

下载 CDS FASTA

LOC131001944
ATGGCTGCTAGGAAGCGACCTTCAGCATCTGACGCCGCAAAATTTGAACCGGAAAAATCAAGACCCGAGATCCATCAAACGGATTCCCCAATTCGTCCCGCGAAATTCTTCACAATCTCTAAAATCTTCCTCATATTTGCCATCCCATACTTTTTCTTGATTTTCTCTTACTGTAAGATTGAATATGAGCTTAAAAAGCCGATCCTCATCAATTCGCTCGTCAGTTTTATCGGGTTTTTCGTTACCGTGAGCTTGATTCC...

Protein

2 records

下载 Protein FASTA

XP_057784580.1
MAARKRPSASDAAKFEPEKSRPEIHQTDSPIRPAKFFTISKIFLIFAIPYFFLIFSYCKIEYELKKPILINSLVSFIGFFVTVSLIPVASKYVSRRNLFGYDINKKGTPDGSIKVPESLGIVVGIVFLVVAILFQYFNFAADSNWLVEYNAALASICFMILLGFVDDVLDVPWRVKLVLPSIAALPLLMAYAGHTSIIIPKPLIPYVGVEILDLGWIYKLYMGLLAVFCTNSINIHAGINGLEVGQTVVIACAILIHNVV...

XP_057784585.1
MAARKRPSASDAAKFEPEKSRPEIHQTDSPIRPAKFFTISKIFLIFAIPYFFLIFSYCKIEYELKKPILINSLVSFIGFFVTVSLIPVASKYVSRRNLFGYDINKKGTPDGSIKVPESLGIVVGIVFLVVAILFQYFNFAADSNWLVEYNAALASICFMILLGFVDDVLDVPWRVKLVLPSIAALPLLMAYAGHTSIIIPKPLIPYVGVEILDLGWIYKLYMGLLAVFCTNSINIHAGINGLEVGQTVVIACAILIHNVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器