Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004396`

染色体: Chr01 坐标: 62112273-62113970 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004396`
名称	SmilChr01G004396
描述	glucan endo-1,3-beta-glucosidase 8-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62112273 - 62113970 / `+`

ID 对照

NCBI Gene ID	`LOC131001808`
GeneID	`131001808`
locus_tag	`-`
NCBI Name	`LOC131001808`
原始查询	`SmilChr01G004396`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucan endo-1,3-beta-glucosidase 8-like
产物	glucan endo-1%2C3-beta-glucosidase 8-like
Arabidopsis	`AT5G64790` (AT5G64790) O-Glycosyl hydrolases family 17 protein [Source:NCBI gene (formerly Entrezgene);Acc:836600] identity=36.9; qcov=0.929; evalue=1.43e-80; confidence=medium
Rice	`Os06g0590600` - identity=36.9; qcov=0.858; evalue=1.09e-74; confidence=medium
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process)
KEGG	-
Pfam	PF00332 (Glyco_hydro_17); PF07983 (X8)
InterPro	-
eggNOG	-
NR	GeneID:131001808

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057784393.1`
2	Cell wall	细胞壁	0.60000	`XP_057784385.1`
3	Cell membrane	细胞膜	0.40000	`XP_057784385.1`
4	Nucleus	细胞核	0.00000	`XP_057784385.1`
5	Chromosome	染色体	0.00000	`XP_057784385.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62112330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,B88,C50
`Chr1:62112391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,D11
`Chr1:62112518`	`GA`	`G`	1bp_deletion	frameshift_variant	36	A3,A6,A7,A9,B10,B108,B11,B111,B126,B17,B31,B32,B36,B49,B62,B7,B71,B73,B78,B8,B81,B82,B97,C12,C17,C25,C29,C40,C43,C53,C61,C76,C87,C9,D3,D9
`Chr1:62112526`	`TAC`	`T`	2bp_deletion	frameshift_variant	1	C6
`Chr1:62112526`	`TAC`	`T`	2bp_deletion	CDS_variant	1	C6
`Chr1:62112622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr1:62112634`	`A`	`AT`	1bp_insertion	frameshift_variant	16	A18,A19,A22,B112,B119,B127,B4,B5,B88,C41,C49,C50,C57,C66,C70,C77
`Chr1:62112802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:62112824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:62112857`	`T`	`TA`	1bp_insertion	frameshift_variant	4	B5,C12,C41,C66
`Chr1:62112857`	`T`	`TA`	1bp_insertion	CDS_variant	4	B5,C12,C41,C66
`Chr1:62112860`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	A22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784385.1

477 aa

238

477

Glyco_hydro_17

PF00332 Glyco_hydro_17 43-356 aa PF07983 X8 379-447 aa

XP_057784393.1

379 aa

190

379

Glyco_hydro_17

PF00332 Glyco_hydro_17 49-258 aa PF07983 X8 281-349 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784385.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	43	356	1.4e-38	133.9	Glycosyl hydrolases family 17
`XP_057784385.1`	Pfam	`PF07983`	X8	Domain	379	447	1.5e-08	35.9	X8 domain
`XP_057784393.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	49	258	4.9e-30	105.9	Glycosyl hydrolases family 17
`XP_057784393.1`	Pfam	`PF07983`	X8	Domain	281	349	1e-08	36.4	X8 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928402.1
AAGTAACTCAATTTTTTTGAGAAATTTCATTTCATTCTTTACCTAGTGATGATCATTCATCAGAAAGGAAGAATGAAAGACATTAGATATTCATCTAATGTGATGGCCAACAAAATGTCGATCCTTGTGTATGTTTGTTCAATTTTGTTTGCAAGCTGCGGCACAGAAGCATTCATCGGCATGACTTGGGGAAGGCAGAGCGCTCAGAGGCTGGTTCCCTCACAGGTGGTTGACTTGATGTTGCAGAACGGAATACGGAA...

XM_057928410.1
GAGAAATTTCATTTCATTCTTTACCTAGTGATGATCATTCATCAGAAAGGAAGAATGAAAGACATTAGATATTCATCTAATGTGATGGCCAACAAAATGTCGATCCTTGTGTATGTTTGTTCAATTTTGTTTGCAAGCTGCGGCACAGAAGCATTCATCGGCATGACTTGGGGAAGGCAGAGCGCTCAGAGGCTGGTTCCCTCACAGGTGGTTGACTTGATGTTGCAGAACGGAATACGGAACACCAGAATCTATTCCTC...

CDS

2 records

下载 CDS FASTA

LOC131001808
ATGATCATTCATCAGAAAGGAAGAATGAAAGACATTAGATATTCATCTAATGTGATGGCCAACAAAATGTCGATCCTTGTGTATGTTTGTTCAATTTTGTTTGCAAGCTGCGGCACAGAAGCATTCATCGGCATGACTTGGGGAAGGCAGAGCGCTCAGAGGCTGGTTCCCTCACAGGTGGTTGACTTGATGTTGCAGAACGGAATACGGAACACCAGAATCTATTCCTCGGAGAATGATATTCTGGAGGCATTTGTCGA...

LOC131001808
ATGATATTCTGGAGGCATTTGTCGACAGCGGGATCGAGCTTACCATCTCCTTGCACAAAGGCGTCCCCTTGTTCCTTGATTTGGCCGGTGATCATCGGAAGCTACGTATTCACGAGCGGACTGAGGGACAAGGCCGCCATTGAAATGACGATGGTGGCGATGAGGAATTTGCAGGAGGCTCTGAGGGAGGTGGGATACGATGGGATTACGGTGAACCTCGTGCATATTCAAAACATGTTGAAACCCAACATCACGAGGCC...

Protein

2 records

下载 Protein FASTA

XP_057784385.1
MIIHQKGRMKDIRYSSNVMANKMSILVYVCSILFASCGTEAFIGMTWGRQSAQRLVPSQVVDLMLQNGIRNTRIYSSENDILEAFVDSGIELTISLHKGVPLFLDLAGARIWVRNKSKYLKSCSIRQVIIGSYVFTSGLRDKAAIEMTMVAMRNLQEALREVGYDGITVNLVHIQNMLKPNITRPSAADFSDEIRGDMIKFVRHLQEHKAPFLLDTFPILDARRNYFNFSFAFMDNTGIAIKDINGAVYTNVFEFTYDSI...

XP_057784393.1
MIFWRHLSTAGSSLPSPCTKASPCSLIWPVIIGSYVFTSGLRDKAAIEMTMVAMRNLQEALREVGYDGITVNLVHIQNMLKPNITRPSAADFSDEIRGDMIKFVRHLQEHKAPFLLDTFPILDARRNYFNFSFAFMDNTGIAIKDINGAVYTNVFEFTYDSIVWALTKINASDVKVVVTQVGWPTDGHVGATAANAERFYRHLLPRVAGNKGTPMRPGAPLDIFVHSLADETKMYYADPFTRHWGVYRSNGQPKYRIDLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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