Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004403

染色体: Chr01 坐标: 62138438-62143661 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004403
名称SmilChr01G004403
描述folylpolyglutamate synthase
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向62138438 - 62143661 / -

ID 对照

NCBI Gene IDLOC131001580
GeneID131001580
locus_tag-
NCBI NameLOC131001580
原始查询SmilChr01G004403

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述folylpolyglutamate synthase
产物folylpolyglutamate synthase
ArabidopsisAT3G10160 (DFC)
DHFS-FPGS homolog C [Source:NCBI gene (formerly Entrezgene);Acc:820179]
identity=62.7; qcov=1; evalue=0; confidence=high
RiceOs03g0111100
-
identity=52.4; qcov=0.969; evalue=0; confidence=high
GOGO:0004326 (tetrahydrofolylpolyglutamate synthase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0046901 (tetrahydrofolylpolyglutamate biosynthetic process)
KEGGsmil00790 (Folate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage))
Pfam-
InterPro-
eggNOG-
NRGeneID:131001580

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057784050.1
2 Cytoplasm 细胞质 0.80000 XP_057784094.1
3 Mitochondrion matrix 线粒体基质 0.80000 XP_057784103.1
4 Cytosol 细胞质基质 0.60000 XP_057784094.1
5 Peroxisome 过氧化物酶体 0.20000 XP_057784094.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:62138981 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:62139084 G A EMS_canonical_SNV CDS_variant 2 C56,D11
Chr1:62139221 C T EMS_canonical_SNV CDS_variant 4 B100,B110,B132,C46
Chr1:62139452 C T EMS_canonical_SNV CDS_variant 3 C37,C63,D9
Chr1:62139481 G A EMS_canonical_SNV CDS_variant 1 C48
Chr1:62139652 G A EMS_canonical_SNV CDS_variant 1 C49
Chr1:62139705 C T EMS_canonical_SNV CDS_variant 1 B2
Chr1:62139992 C T EMS_canonical_SNV CDS_variant 3 B78,C5,D10
Chr1:62140192 G A EMS_canonical_SNV CDS_variant 3 C2,C32,C68
Chr1:62140776 C T EMS_canonical_SNV CDS_variant 3 C37,C63,D9
Chr1:62141760 G A EMS_canonical_SNV CDS_variant 1 B34
Chr1:62142775 C T EMS_canonical_SNV CDS_variant 4 B109,B86,B9,C44

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057928103.1
GGGCAAAGCCGTCATATCGCAACAAGGCAGCGCCCACTATAAAACTCGCCGTTCACAGACAGCCACGGATTACCATAAATAGACACCAAAACACACACTACTTCTCTCATCAACGCACGACACAATCATCATAACAAAGATAATACTAGTACTATATGTCAACCTGAAGATTTGGTTGATCTATGCTCAAGTATAAGAACCTTTTTCTGAGGCAGGGGTTAATTGGCAATCCGGGATTCATTCAAAGAGAGCACTTCGTT...
XM_057928086.1
GGGCAAAGCCGTCATATCGCAACAAGGCAGCGCCCACTATAAAACTCGCCGTTCACAGACAGCCACGGATTACCATAAATAGACACCAAAACACACACTACTTCTCTCATCAACGCACGACACAATCATCATAACAAAGATAATACTAGTACTATATGTCAACCTGAAGATTTGGTTGATCTATGCTCAAGTATAAGAACCTTTTTCTGAGGCAGGGGTTAATTGGCAATCCGGGATTCATTCAAAGAGAGCACTTCGTT...

CDS

8 records

下载 CDS FASTA
LOC131001580
ATGCTCAAGTATAAGAACCTTTTTCTGAGGCAGGGGTTAATTGGCAATCCGGGATTCATTCAAAGAGAGCACTTCGTTCCTTCTAAATTGACATGGGCGGCTTCGTGCTTGCCTGCTTGCCCGTCTGCAGTTGATCTATTGGGAACTAAGAGGTTCTATTCTCAAGAATTGGGGCTCAAAGGTTTTGGAGTTACAGAGGTTTCATCACAGGTTCTGCGACAGATGGAGACCAATACGGTGATTGCAGAAAATGCAGACCA...
LOC131001580
ATGCTCAAGTATAAGAACCTTTTTCTGAGGCAGGGGTTAATTGGCAATCCGGGATTCATTCAAAGAGAGCACTTCGTTCCTTCTAAATTGACATGGGCGGCTTCGTGCTTGCCTGCTTGCCCGTCTGCAGTTGATCTATTGGGAACTAAGAGGTTCTATTCTCAAGAATTGGGGCTCAAAGGTTTTGGAGTTACAGAGGTTTCATCACAGGTTCTGCGACAGATGGAGACCAATACGGTGATTGCAGAAAATGCAGACCA...

Protein

8 records

下载 Protein FASTA
XP_057784050.1
MLKYKNLFLRQGLIGNPGFIQREHFVPSKLTWAASCLPACPSAVDLLGTKRFYSQELGLKGFGVTEVSSQVLRQMETNTVIAENADHLHPTYDTAMEALSSLITTKRRGDVQTISNKYTKLERMQMYVKILGLEEPIDRLKIIHVAGTKGKGSTCSFCEAILRESGFRTGLFTSPHLIDVRERFRLDGLDISEEKFLHYFWECWNQLKENITEDLPMPPLFQFLTVLAFKIFSCEKVDVAIIEVGLGGTRDSTNVIKNPV...
XP_057784059.1
MLKYKNLFLRQGLIGNPGFIQREHFVPSKLTWAASCLPACPSAVDLLGTKRFYSQELGLKGFGVTEVSSQVLRQMETNTVIAENADHLHPTYDTAMEALSSLITTKRRGDVQTISNKYTKLERMQMYVKILGLEEPIDRLKIIHVAGTKGKGSTCSFCEAILRESGFRTGLFTSPHLIDVRERFRLDGLDISEEKFLHYFWECWNQLKENITEDLPMPPLFQFLTVLAFKIFSCEKVDVAIIEVGLGGTRDSTNVIKNPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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