当前解析结果
SmilChr01G004405| 统一新 Gene ID | SmilChr01G004405 |
|---|---|
| 名称 | SmilChr01G004405 |
| 描述 | uncharacterized SmilChr01G004405 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 62149137 - 62154198 / - |
| NCBI Gene ID | LOC131001573 |
|---|---|
| GeneID | 131001573 |
| locus_tag | - |
| NCBI Name | LOC131001573 |
| 原始查询 | SmilChr01G004405 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | N-acetyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:818743]; symbol=AT2G41450; hit=AT2G41450; species=arabidopsis; confidence=medium |
| 产物 | N-acetyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:818743]; symbol=AT2G41450; hit=AT2G41450; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G41450 (AT2G41450)N-acetyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:818743] identity=44.3; qcov=1.01; evalue=4.1e-174; confidence=medium |
| Rice | Os05g0376600- identity=41.8; qcov=1; evalue=7.39e-160; confidence=medium |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | - |
| Pfam | PF00533 (BRCT); PF00583 (Acetyltransf_1); PF16589 (BRCT_2); PF16770 (RTT107_BRCT_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001573 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784039.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057784039.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057784039.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057784039.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057784039.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:62149541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:62149553 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B110,B132,C46,D11 |
Chr1:62149570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr1:62149707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B136,B35,C19,C78 |
Chr1:62149713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr1:62149879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:62150394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr1:62150695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:62150898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B21,B49,B6,B99,C31 |
Chr1:62151569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B19,B21,B83,C24 |
Chr1:62151692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B86,B9,C44 |
Chr1:62151731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B86,B9,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784039.1PF00583
Acetyltransf_1 129-213 aa
PF16770
RTT107_BRCT_5 457-529 aa
PF00533
BRCT 460-516 aa
PF16589
BRCT_2 556-637 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784039.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 129 | 213 | 1.4e-05 | 26.1 | Acetyltransferase (GNAT) family |
XP_057784039.1 |
Pfam | PF16770 |
RTT107_BRCT_5 | Domain | 457 | 529 | 3.7e-08 | 33.9 | Regulator of Ty1 transposition protein 107 BRCT domain |
XP_057784039.1 |
Pfam | PF00533 |
BRCT | Domain | 460 | 516 | 8.2e-11 | 42.7 | BRCA1 C Terminus (BRCT) domain |
XP_057784039.1 |
Pfam | PF16589 |
BRCT_2 | Domain | 556 | 637 | 6.4e-19 | 68.8 | BRCT domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。