Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004411`

染色体: Chr01 坐标: 62214488-62219697 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004411`
名称	SmilChr01G004411
描述	triacylglycerol lipase SDP1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62214488 - 62219697 / `+`

ID 对照

NCBI Gene ID	`LOC131001540`
GeneID	`131001540`
locus_tag	`-`
NCBI Name	`LOC131001540`
原始查询	`SmilChr01G004411`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	triacylglycerol lipase SDP1-like
产物	triacylglycerol lipase SDP1-like
Arabidopsis	`AT5G04040` (SDP1) Patatin-like phospholipase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830283] identity=72.9; qcov=0.959; evalue=0; confidence=high
Rice	`Os01g0762000` (OspPLAIValpha) - identity=68; qcov=0.964; evalue=0; confidence=high
GO	GO:0004806 (triacylglycerol lipase activity); GO:0006629 (lipid metabolic process)
KEGG	smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00590 (Arachidonic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00591 (Linoleic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01734 (Patatin); PF11815 (DUF3336)
InterPro	-
eggNOG	-
NR	GeneID:131001540

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057783959.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057783959.1`
3	Mitochondrion membrane	线粒体膜	0.40000	`XP_057783959.1`
4	Mitochondrion outer membrane	线粒体外膜	0.40000	`XP_057783959.1`
5	Lipid droplet	脂滴	0.40000	`XP_057783959.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62215477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr1:62215492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,C52
`Chr1:62215759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr1:62215996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr1:62216014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr1:62216089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,C62
`Chr1:62216251`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B29,B4,B97,C17
`Chr1:62216356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,B84
`Chr1:62216521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B95
`Chr1:62216701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B29,B4,B97,C17
`Chr1:62216764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B82,B90,B92
`Chr1:62216854`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783959.1

862 aa

431

862

DUF3336

Patatin

PF11815 DUF3336 98-229 aa PF01734 Patatin 236-430 aa

XP_057783970.1

862 aa

431

862

DUF3336

Patatin

PF11815 DUF3336 98-229 aa PF01734 Patatin 236-430 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783959.1`	Pfam	`PF11815`	DUF3336	Family	98	229	4e-32	111.5	Domain of unknown function (DUF3336)
`XP_057783959.1`	Pfam	`PF01734`	Patatin	Domain	236	430	3.6e-19	70.4	Patatin-like phospholipase
`XP_057783970.1`	Pfam	`PF11815`	DUF3336	Family	98	229	4e-32	111.5	Domain of unknown function (DUF3336)
`XP_057783970.1`	Pfam	`PF01734`	Patatin	Domain	236	430	3.6e-19	70.4	Patatin-like phospholipase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927976.1
ATCCCCGAATAATTTATCGAGTAATTTACCAAAGCCCTCCTCGAATATTTCTGTTGTTTGATTATAATTTTGTTTTGACACAAAGCTTGGGTTTTTCCTTTTTTGTCCGAAAAGATAAAGTTACAATCTTTGCATATGAAACCAAAAAAAAGAAAGCTTCTTCAACCGTCACAATTTCTGTGTCTGATTCGGAATTCCGAAATTCCATAACAAACATACGAAGATAAACGAAGAATTAATAAAAGATAAATTGCGATAGC...

XM_057927987.1
ATCCCCGAATAATTTATCGAGTAATTTACCAAAGCCCTCCTCGAATATTTCTGTTGTTTGATTATAATTTTGTTTTGACACAAAGCTTGGGTTTTTCCTTTTTTGTCCGAAAAGATAAAGTTACAATCTTTGCATATGAAACCAAAAAAAAGAAAGCTTCTTCAACCGTCACAATTTCTGTGTCTGATTCGGAATTCCGAAATTCCATAACAAACATACGAAGATAAACGAAGAATTAATAAAAGATAAATTGCGATAGC...

CDS

2 records

下载 CDS FASTA

LOC131001540
ATGGATATCAGTAATGAGGCTAGGGTTGATTCATTCTCAATTGGGCCGTCTACACTTTTTGGCCGGACCATTGCTTTTAGAGTGTTATTCTGCAATTCCATGTCACATTTGAGGCATCAAATATTTGGGATGTTGTGGATGTACATTTACAAGTTGAAGAACTGTTTGAGTGACTACTTATCCCCTGTGATCTCATGGTTCCATCCAAGGAATCCACAAGGGATTCTCGTGATGGTGACGATGATTGCCTTCTTGTTGAA...

Protein

2 records

下载 Protein FASTA

XP_057783959.1
MDISNEARVDSFSIGPSTLFGRTIAFRVLFCNSMSHLRHQIFGMLWMYIYKLKNCLSDYLSPVISWFHPRNPQGILVMVTMIAFLLKRYTNVKMRAEMAYRRKFWRNMMRAALTYEEWAHAAKMMDKETLKMNESDLYDEELVRNKLQELRHRRQEGSLRDIIFCMRADLVRNLGNMCNPELHKGRLHVPKLIKEYIDEVTTQLRMVCDSDSEELLLEEKLAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKL...

XP_057783970.1
MDISNEARVDSFSIGPSTLFGRTIAFRVLFCNSMSHLRHQIFGMLWMYIYKLKNCLSDYLSPVISWFHPRNPQGILVMVTMIAFLLKRYTNVKMRAEMAYRRKFWRNMMRAALTYEEWAHAAKMMDKETLKMNESDLYDEELVRNKLQELRHRRQEGSLRDIIFCMRADLVRNLGNMCNPELHKGRLHVPKLIKEYIDEVTTQLRMVCDSDSEELLLEEKLAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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