Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004412`

染色体: Chr01 坐标: 62243807-62244992 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004412`
名称	SmilChr01G004412
描述	probable calcium-binding protein CML36
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62243807 - 62244992 / `+`

ID 对照

NCBI Gene ID	`LOC131002272`
GeneID	`131002272`
locus_tag	`-`
NCBI Name	`LOC131002272`
原始查询	`SmilChr01G004412`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML36
产物	probable calcium-binding protein CML36
Arabidopsis	`AT3G10190` (AT3G10190) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:820181] identity=48.6; qcov=0.991; evalue=1.19e-62; confidence=high
Rice	`Os01g0949500` (OsCML10) - identity=42.8; qcov=0.622; evalue=4.7e-32; confidence=medium
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131002272

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057784741.1`
2	Cytoplasm	细胞质	0.60000	`XP_057784741.1`
3	Nucleus	细胞核	0.00000	`XP_057784741.1`
4	Chromosome	染色体	0.00000	`XP_057784741.1`
5	Centromere	着丝粒	0.00000	`XP_057784741.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62244287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,C84
`Chr1:62244289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B59,C3,C70
`Chr1:62244337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B35,C11,D7
`Chr1:62244384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,B46
`Chr1:62244407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,D2
`Chr1:62244408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B78,B88,C74
`Chr1:62244414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr1:62244460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B78,C74
`Chr1:62244473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr1:62244591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:62244596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,B78
`Chr1:62244609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784741.1

222 aa

111

222

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF00036 EF-hand_1 81-108 aa PF13405 EF-hand_6 81-110 aa PF13499 EF-hand_7 81-141 aa PF13202 EF-hand_5 82-105 aa PF13833 EF-hand_8 86-106 aa PF13833 EF-hand_8 94-140 aa PF00036 EF-hand_1 118-142 aa PF13202 EF-hand_5 119-140 aa PF13833 EF-hand_8 153-179 aa PF13499 EF-hand_7 153-216 aa PF13405 EF-hand_6 154-183 aa PF13202 EF-hand_5 155-175 aa PF13833 EF-hand_8 168-219 aa PF00036 EF-hand_1 191-218 aa PF13202 EF-hand_5 199-216 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784741.1`	Pfam	`PF00036`	EF-hand_1	Domain	81	108	2.4e-31	105.7	EF hand domain
`XP_057784741.1`	Pfam	`PF13405`	EF-hand_6	Domain	81	110	8.3e-27	91.0	EF-hand domain
`XP_057784741.1`	Pfam	`PF13499`	EF-hand_7	Domain	81	141	2e-30	105.7	EF-hand domain pair
`XP_057784741.1`	Pfam	`PF13202`	EF-hand_5	Domain	82	105	9e-25	85.7	EF hand
`XP_057784741.1`	Pfam	`PF13833`	EF-hand_8	Domain	86	106	2.4e-20	72.7	EF-hand domain pair
`XP_057784741.1`	Pfam	`PF13833`	EF-hand_8	Domain	94	140	2.4e-20	72.7	EF-hand domain pair
`XP_057784741.1`	Pfam	`PF00036`	EF-hand_1	Domain	118	142	2.4e-31	105.7	EF hand domain
`XP_057784741.1`	Pfam	`PF13202`	EF-hand_5	Domain	119	140	9e-25	85.7	EF hand
`XP_057784741.1`	Pfam	`PF13833`	EF-hand_8	Domain	153	179	2.4e-20	72.7	EF-hand domain pair
`XP_057784741.1`	Pfam	`PF13499`	EF-hand_7	Domain	153	216	2e-30	105.7	EF-hand domain pair
`XP_057784741.1`	Pfam	`PF13405`	EF-hand_6	Domain	154	183	8.3e-27	91.0	EF-hand domain
`XP_057784741.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	175	9e-25	85.7	EF hand
`XP_057784741.1`	Pfam	`PF13833`	EF-hand_8	Domain	168	219	2.4e-20	72.7	EF-hand domain pair
`XP_057784741.1`	Pfam	`PF00036`	EF-hand_1	Domain	191	218	2.4e-31	105.7	EF hand domain
`XP_057784741.1`	Pfam	`PF13202`	EF-hand_5	Domain	199	216	9e-25	85.7	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928758.1
TCGAGTCCCCCTTATTAGGTCGCCACTGCGGATGGTCGTACTCGTATTAGAATTTACAAGACTGAAATAATTAATGCCTAATAAATTAGGTAATTTAGCAAGAGCCGCAAGGAAAGGCGCACGTAAAACCAACGCGACAAAAGTAAAACCCACCAAACCTAAATTTAACTCAAACCCAATTGCGTCCTTTCCAATAAATACTCTTCAAATACCAAAACCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTATCTCTAGGAA...

CDS

1 records

下载 CDS FASTA

LOC131002272
ATGAAGCTCGCCAAGATTGTTCCCGCCAAGCTCTTCAGATCGAAGAAATCGCGCTCGGTTTCCAGATCCGAGGCCGAGCCGTCGTCCTTCAGCTCCCATACGACGTCCTCCTCCTCCTCCTCTGAGGACGGCGGCCTCAAGAGGCCGGCCGGCCTTTCCACGCCGACCAGCGTCCTCCCCTCGACCTCCGCCGGCATGTCGACGGAGGAGTGGACGGAGATATCCGCCGCCGTCTACTTCGAGCTGAAGCAGGCGTTCGA...

Protein

1 records

下载 Protein FASTA

XP_057784741.1
MKLAKIVPAKLFRSKKSRSVSRSEAEPSSFSSHTTSSSSSSEDGGLKRPAGLSTPTSVLPSTSAGMSTEEWTEISAAVYFELKQAFEMIDRDGDGKITKEELESLLSRLGAEPPSKEELRQMLSEVDRDGDGCITLEEFHAIGSAFAPSTDSSELRHTFDFFDSDRDGRITAEELFSVFKTIGDARCTLEDCRRMIRGVDRNGDGFVCFEDFTRMMEHQQQR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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