Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004417`

染色体: Chr01 坐标: 62306415-62310594 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004417`
名称	SmilChr01G004417
描述	L-galactono-1,4-lactone dehydrogenase, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62306415 - 62310594 / `-`

ID 对照

NCBI Gene ID	`LOC131002450`
GeneID	`131002450`
locus_tag	`-`
NCBI Name	`LOC131002450`
原始查询	`SmilChr01G004417`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	L-galactono-1,4-lactone dehydrogenase, mitochondrial
产物	L-galactono-1%2C4-lactone dehydrogenase%2C mitochondrial
Arabidopsis	`AT3G47930` (GLDH) L-galactono-1,4-lactone dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:823948] identity=77.6; qcov=0.958; evalue=0; confidence=high
Rice	`Os12g0139600` (GLDH2) - identity=73.2; qcov=0.964; evalue=0; confidence=high
GO	GO:0003885 (D-arabinono-1,4-lactone oxidase activity); GO:0016020 (membrane); GO:0016633 (galactonolactone dehydrogenase activity); GO:0071949 (FAD binding)
KEGG	smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01565 (FAD_binding_4); PF04030 (ALO)
InterPro	-
eggNOG	-
NR	GeneID:131002450

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057784934.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057784934.1`
3	Mitochondrion inner membrane	线粒体内膜	0.80000	`XP_057784934.1`
4	Nucleus	细胞核	0.00000	`XP_057784934.1`
5	Chromosome	染色体	0.00000	`XP_057784934.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62306833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:62306855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:62307201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C27
`Chr1:62307259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:62307286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr1:62307476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:62307752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:62307767`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:62307778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr1:62308072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:62308423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr1:62309705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784934.1

577 aa

288

577

FAD_binding_4

ALO

PF01565 FAD_binding_4 96-225 aa PF04030 ALO 252-569 aa

XP_057784941.1

577 aa

288

577

FAD_binding_4

ALO

PF01565 FAD_binding_4 96-225 aa PF04030 ALO 252-569 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784934.1`	Pfam	`PF01565`	FAD_binding_4	Domain	96	225	5e-28	98.3	FAD binding domain
`XP_057784934.1`	Pfam	`PF04030`	ALO	Family	252	569	8.7e-18	65.7	D-arabinono-1,4-lactone oxidase
`XP_057784941.1`	Pfam	`PF01565`	FAD_binding_4	Domain	96	225	5e-28	98.3	FAD binding domain
`XP_057784941.1`	Pfam	`PF04030`	ALO	Family	252	569	8.7e-18	65.7	D-arabinono-1,4-lactone oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928951.1
TCTTGACTTATTGTGAGTGTGTGTGTCTTTTTTGTAGGAGTGTTTTTCATTGAGTTGTTATTGTGTGTCATTTTTTTTTGAGTTGTTATTTTATTGTTATTGTGTGTCATTTTGAGTTGCTCTATAGTTGAATTTGTTGAAAAGCTTTGATTTTGAGAGCTGATTCTTATAAAAATCCAAGCCATATATCACTAAACTTTGCTAAAGAAACTGAACAAGTTTATCTATATCCTTAATCTCAATTCTCAACATACAACTCT...

XM_057928958.1
TCATTGAGTTGTTATTGTGTGTCATTTTTTTTTGAGTTGTTATTTTATTGTTATTGTGTGTCATTTTGAGTTGCTCTATAGTTGAATTTGTTGAAAAGCTTTGATTTTGAGAGCTGATTCTTATAAAAATCCAAGCCATATATCACTAAACTTTGCTAAAGAAACTGAACAAGTTTATCTATATCCTTAATCTCAATTCTCAACATACAACTCTGAAATGCTGCTTGCTGTCATCAAAAAGCCGGCCCCATTTCTACACA...

CDS

2 records

下载 CDS FASTA

LOC131002450
ATGCTCCGTCTCCACAACCTCCGCCGCTGTCTGCAGCCCCTCCGCCGCCGCCCCTTCTGCTCCGTGCCCAACCCGCCCCCTTCCGCCAGCAGAGACGCCGAATTCCGGCGATACATCGGCTACGGCGTGCTCTTCCTCGGCTGCGGCGCCATCACCTACTACTCCTTCCCCTTCCCGGAGAGCGCCAAGCACAAGAAGGCCGAGCTCTTCCGCTACGCGCCGCTGCCGGCCGACCTCCACACCGTGTCGAACTGGAGCGG...

Protein

2 records

下载 Protein FASTA

XP_057784934.1
MLRLHNLRRCLQPLRRRPFCSVPNPPPSASRDAEFRRYIGYGVLFLGCGAITYYSFPFPESAKHKKAELFRYAPLPADLHTVSNWSGTHEVQTRTFLQPESAAELESVVKEYNEKKQKIRPVGSGLSPNGIGLTRNGMVNLALMDRVLEVDEKNKRVRVEAGIRVQQLVDGIKEYGLTLQNFASIREQQIGGIIQVGAHGTGARLPPIDEQVISMKLVTPTKGTIEVSKEKDPELFYLARCGLGGLGVVSEVTLQCVERQ...

XP_057784941.1
MLRLHNLRRCLQPLRRRPFCSVPNPPPSASRDAEFRRYIGYGVLFLGCGAITYYSFPFPESAKHKKAELFRYAPLPADLHTVSNWSGTHEVQTRTFLQPESAAELESVVKEYNEKKQKIRPVGSGLSPNGIGLTRNGMVNLALMDRVLEVDEKNKRVRVEAGIRVQQLVDGIKEYGLTLQNFASIREQQIGGIIQVGAHGTGARLPPIDEQVISMKLVTPTKGTIEVSKEKDPELFYLARCGLGGLGVVSEVTLQCVERQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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