Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004427`

染色体: Chr01 坐标: 62372553-62377060 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004427`
名称	SmilChr01G004427
描述	uncharacterized SmilChr01G004427
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62372553 - 62377060 / `-`

ID 对照

NCBI Gene ID	`LOC131002567`
GeneID	`131002567`
locus_tag	`-`
NCBI Name	`LOC131002567`
原始查询	`SmilChr01G004427`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histidine-tRNA ligase [Source:NCBI gene (formerly Entrezgene);Acc:820187]; symbol=AT3G10250; hit=AT3G10250; species=arabidopsis; confidence=high
产物	histidine-tRNA ligase [Source:NCBI gene (formerly Entrezgene);Acc:820187]; symbol=AT3G10250; hit=AT3G10250; species=arabidopsis; confidence=high
Arabidopsis	`AT3G10250` (AT3G10250) histidine-tRNA ligase [Source:NCBI gene (formerly Entrezgene);Acc:820187] identity=46.3; qcov=1.01; evalue=1.44e-85; confidence=high
Rice	`Os02g0137100` - identity=42.5; qcov=1.03; evalue=3.4e-72; confidence=medium
GO	-
KEGG	-
Pfam	PF09713 (A_thal_3526)
InterPro	-
eggNOG	-
NR	GeneID:131002567

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057785022.1`
2	Nucleoplasm	核质	0.20000	`XP_057785022.1`
3	Chromosome	染色体	0.00000	`XP_057785022.1`
4	Centromere	着丝粒	0.00000	`XP_057785022.1`
5	Chromatin	染色质	0.00000	`XP_057785022.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62373176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785022.1

322 aa

N

1

161

322

A_thal_3526

C

PF09713 A_thal_3526 17-69 aa

XP_057785025.1

322 aa

N

1

161

322

A_thal_3526

C

PF09713 A_thal_3526 17-69 aa

XP_057785029.1

322 aa

N

1

161

322

A_thal_3526

C

PF09713 A_thal_3526 17-69 aa

XP_057785037.1

322 aa

N

1

161

322

A_thal_3526

C

PF09713 A_thal_3526 17-69 aa

XP_057785044.1

322 aa

N

1

161

322

A_thal_3526

C

PF09713 A_thal_3526 17-69 aa

XP_057785051.1

322 aa

N

1

161

322

A_thal_3526

C

PF09713 A_thal_3526 17-69 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785022.1`	Pfam	`PF09713`	A_thal_3526	Domain	17	69	4e-26	91.8	Plant protein 1589 of unknown function (A_thal_3526)
`XP_057785025.1`	Pfam	`PF09713`	A_thal_3526	Domain	17	69	4e-26	91.8	Plant protein 1589 of unknown function (A_thal_3526)
`XP_057785029.1`	Pfam	`PF09713`	A_thal_3526	Domain	17	69	4e-26	91.8	Plant protein 1589 of unknown function (A_thal_3526)
`XP_057785037.1`	Pfam	`PF09713`	A_thal_3526	Domain	17	69	4e-26	91.8	Plant protein 1589 of unknown function (A_thal_3526)
`XP_057785044.1`	Pfam	`PF09713`	A_thal_3526	Domain	17	69	4e-26	91.8	Plant protein 1589 of unknown function (A_thal_3526)
`XP_057785051.1`	Pfam	`PF09713`	A_thal_3526	Domain	17	69	4e-26	91.8	Plant protein 1589 of unknown function (A_thal_3526)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057929061.1
ATATCATAAAGAGTTGTACATGGAGTGGAAGATCACAAAATTCGATTCCTCTTTGACTCCGCCGCTGTACCTCGCGCATCAGCAGCTGTACCCTGTATTGGCAGTGGCGAATATTTCTCTGGAATCAGGAAAATATTGAATTAGCGGCCCATTCCATCACTTTATCTCTCTCCAGGAAAAAATAAATATTCTCTCTCTCTTTAATTTCGGCAACAGAAAAGGCAACGCTAACAGATTTTGAGGCTAGATCGAGTGCTCAA...

XM_057929042.1
ATATCATAAAGAGTTGTACATGGAGTGGAAGATCACAAAATTCGATTCCTCTTTGACTCCGCCGCTGTACCTCGCGCATCAGCAGCTGTACCCTGTATTGGCAGTGGCGAATATTTCTCTGGAATCAGGAAAATATTGAATTAGCGGCCCATTCCATCACTTTATCTCTCTCCAGGAAAAAATAAATATTCTCTCTCTCTTTAATTTCGGCAACAGAAAAGGCAACGCTAACAGATTTTGAGGCTAGATCGAGTGCTCAA...

CDS

6 records

下载 CDS FASTA

LOC131002567
ATGTCTACTGGAGATGGTAGAAAAGTCTCTCTACAGGATATACAGTTGGTTCAAAATCTTATAGAAAGGTGTCTTCAGCTTTACATGACCAAGAGGGAAGTTGTGAATACACTGTACCATCAGGCAAAAATCGAGCCTGATTTTACTGAACTCGTGTGGCAGAAACTTGAAGCAGAAAATCAGGAATTTTTCAGGGCATATTATGCAAAGCTGACAGTGAAGGACCAAATATTGCGATTCAATCAGTTGCTCGAGAGACA...

LOC131002567
ATGTCTACTGGAGATGGTAGAAAAGTCTCTCTACAGGATATACAGTTGGTTCAAAATCTTATAGAAAGGTGTCTTCAGCTTTACATGACCAAGAGGGAAGTTGTGAATACACTGTACCATCAGGCAAAAATCGAGCCTGATTTTACTGAACTCGTGTGGCAGAAACTTGAAGCAGAAAATCAGGAATTTTTCAGGGCATATTATGCAAAGCTGACAGTGAAGGACCAAATATTGCGATTCAATCAGTTGCTCGAGAGACA...

Protein

6 records

下载 Protein FASTA

XP_057785022.1
MSTGDGRKVSLQDIQLVQNLIERCLQLYMTKREVVNTLYHQAKIEPDFTELVWQKLEAENQEFFRAYYAKLTVKDQILRFNQLLERQVELMHQMSQNRASLAPLSNGSQTHHSIHRNTAYRDPQPHIPSLKSKNMHPVVSVVPNGYTNGTYSLQQHMQVAANFPGHAGRMDFHPHMPRVQNSNAGIMQGFNERTIKTEGVYAGNSPVMFVPDNNYAESHNVIRETSISPFNGGESCSQSFNESMLETEMNSFGVEQMTQN...

XP_057785025.1
MSTGDGRKVSLQDIQLVQNLIERCLQLYMTKREVVNTLYHQAKIEPDFTELVWQKLEAENQEFFRAYYAKLTVKDQILRFNQLLERQVELMHQMSQNRASLAPLSNGSQTHHSIHRNTAYRDPQPHIPSLKSKNMHPVVSVVPNGYTNGTYSLQQHMQVAANFPGHAGRMDFHPHMPRVQNSNAGIMQGFNERTIKTEGVYAGNSPVMFVPDNNYAESHNVIRETSISPFNGGESCSQSFNESMLETEMNSFGVEQMTQN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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