当前解析结果
SmilChr01G004438| 统一新 Gene ID | SmilChr01G004438 |
|---|---|
| 名称 | SmilChr01G004438 |
| 描述 | uncharacterized SmilChr01G004438 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 62466956 - 62467926 / - |
| NCBI Gene ID | LOC131011236 |
|---|---|
| GeneID | 131011236 |
| locus_tag | - |
| NCBI Name | LOC131011236 |
| 原始查询 | SmilChr01G004438 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0523701; species=rice; confidence=weak |
| 产物 | hit=Os06g0523701; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os06g0523701- identity=46.6; qcov=0.249; evalue=8.79e-19; confidence=weak |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011236 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795010.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057795010.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057795010.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057795010.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795010.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:62466994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:62467007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B101,B135 |
Chr1:62467023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr1:62467042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B104,B63,B83 |
Chr1:62467086 |
C |
CAA |
2bp_insertion | frameshift_variant | 202 | A1,A10,A11,A13,A14,A16,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A8,A9,B1,B10,B100,B101,B104,B105,B107,B108,B109,B11,B110,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B137,B138,B139,B140,B15,B16,B18,B19,B2,B21,B22,B23,B24,B25,B27,B28,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B44,B47,B48,B49,B5,B55,B56,B57,B59,B6,B62,B63,B64,B65,B66,B69,B7,B70,B71,B72,B73,B74,B76,B77,B78,B8,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B92,B94,B95,B98,C1,C10,C11,C13,C14,C15,C16,C17,C19,C2,C20,C21,C23,C26,C28,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C4,C40,C42,C43,C44,C45,C46,C48,C50,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C82,C83,C84,C85,C87,C9,D1,D10,D11,D3,D4,D6,D7,D8,D9 |
Chr1:62467088 |
CTT |
C |
2bp_deletion | frameshift_variant | 201 | A1,A10,A11,A13,A14,A16,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A8,A9,B1,B10,B100,B101,B104,B105,B107,B108,B109,B11,B110,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B137,B138,B139,B140,B15,B16,B18,B19,B2,B21,B22,B23,B24,B25,B27,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B44,B47,B48,B49,B5,B55,B56,B57,B59,B6,B62,B63,B64,B65,B66,B69,B7,B70,B71,B72,B73,B74,B76,B77,B78,B8,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B92,B94,B95,B98,C1,C10,C11,C13,C14,C15,C16,C17,C19,C2,C20,C21,C23,C26,C28,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C4,C40,C42,C43,C44,C45,C46,C48,C50,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C82,C83,C84,C85,C87,C9,D1,D10,D11,D3,D4,D6,D7,D8,D9 |
Chr1:62467103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B65,C35,C46 |
Chr1:62467130 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,C11,C23,C42 |
Chr1:62467157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,B41,B48,B97 |
Chr1:62467225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B16,C20 |
Chr1:62467239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr1:62467256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B23,B27,C53,C77 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。