Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004439`

染色体: Chr01 坐标: 62475802-62476465 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004439`
名称	SmilChr01G004439
描述	uncharacterized SmilChr01G004439
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62475802 - 62476465 / `+`

ID 对照

NCBI Gene ID	`LOC131011246`
GeneID	`131011246`
locus_tag	`-`
NCBI Name	`LOC131011246`
原始查询	`SmilChr01G004439`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835661]; symbol=AT5G55670; hit=AT5G55670; species=arabidopsis; confidence=high
产物	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835661]; symbol=AT5G55670; hit=AT5G55670; species=arabidopsis; confidence=high
Arabidopsis	`AT5G55670` (AT5G55670) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835661] identity=60.9; qcov=1.02; evalue=6.65e-51; confidence=high
Rice	`Os08g0490300` - identity=40; qcov=0.878; evalue=1.82e-10; confidence=low
GO	GO:0003729 (mRNA binding); GO:0005847 (mRNA cleavage and polyadenylation specificity factor complex); GO:0110104 (mRNA alternative polyadenylation)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131011246

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795020.1`
2	Nuclear speckle	核斑点	0.60000	`XP_057795020.1`
3	Nucleoplasm	核质	0.60000	`XP_057795020.1`
4	Chromosome	染色体	0.00000	`XP_057795020.1`
5	Centromere	着丝粒	0.00000	`XP_057795020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62475904`	`AG`	`A`	1bp_deletion	frameshift_variant	70	A11,A14,A15,A23,A24,B109,B11,B112,B114,B120,B122,B126,B129,B13,B131,B133,B139,B18,B19,B2,B21,B24,B26,B29,B30,B34,B4,B44,B46,B48,B51,B56,B58,B59,B64,B68,B74,B75,B77,B87,B94,B96,C12,C17,C18,C19,C2,C20,C24,C26,C29,C30,C32,C33,C35,C37,C41,C45,C50,C52,C59,C68,C74,C79,D3,D4,D5,D6,D7,D8
`Chr1:62475986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B127,B79,D1
`Chr1:62475989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr1:62476001`	`A`	`AG`	1bp_insertion	frameshift_variant	1	B131
`Chr1:62476001`	`A`	`AG`	1bp_insertion	CDS_variant	1	B131
`Chr1:62476002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:62476006`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C42
`Chr1:62476006`	`GC`	`G`	1bp_deletion	CDS_variant	1	C42
`Chr1:62476036`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:62476081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B15,C28,C55
`Chr1:62476091`	`A`	`AG`	1bp_insertion	frameshift_variant	4	A11,B15,C28,C55
`Chr1:62476091`	`A`	`AG`	1bp_insertion	CDS_variant	4	A11,B15,C28,C55

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939037.1
GGTGTTCTTTGGAAGGGGAATGCCCTTGGGTGGCATGGGGATGGTTCCCACTCCTGGAGTTGAGGGGCCTAATATGGGAATGTGGTGAGATCCTAATATGGGAGGATGGGCAGGAGATGAGCACGTAGGGAGAGCAGGGGAATCTAGTTATGGGGAAGAAGCTACATCGGACCATCAGTACGGGGAAGGGAGTCAAGAGAGGGGGCCGTGGCCAAATGCCATGAAGGATAAAGACAGAGGGTCAGAGAGGGACTGGTCTG...

CDS

1 records

下载 CDS FASTA

LOC131011246
ATGGGAGGATGGGCAGGAGATGAGCACGTAGGGAGAGCAGGGGAATCTAGTTATGGGGAAGAAGCTACATCGGACCATCAGTACGGGGAAGGGAGTCAAGAGAGGGGGCCGTGGCCAAATGCCATGAAGGATAAAGACAGAGGGTCAGAGAGGGACTGGTCTGGCTCTTCCGAAAGAAGGTACAGAGATGATAGGGGAACAGGGTATGAAAGAGATGCGCCTAGAGAGAAAGATGCTGGACAAGATCATGATTGGTCAAA...

Protein

1 records

下载 Protein FASTA

XP_057795020.1
MGGWAGDEHVGRAGESSYGEEATSDHQYGEGSQERGPWPNAMKDKDRGSERDWSGSSERRYRDDRGTGYERDAPREKDAGQDHDWSKRRHRDDKDVGRDRQKERDKDRERSLDHDRGGRERERERHRDDRGRYADHHRHRNREAEYDDDWDRGRSSRSHGKSRVSHEEEHRSRSRDADYGKRQRLTSE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器