当前解析结果
SmilChr01G004441| 统一新 Gene ID | SmilChr01G004441 |
|---|---|
| 名称 | SmilChr01G004441 |
| 描述 | ferredoxin-dependent glutamate synthase, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 62504638 - 62517725 / - |
| NCBI Gene ID | LOC131002714 |
|---|---|
| GeneID | 131002714 |
| locus_tag | - |
| NCBI Name | LOC131002714 |
| 原始查询 | SmilChr01G004441 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ferredoxin-dependent glutamate synthase, chloroplastic-like |
| 产物 | ferredoxin-dependent glutamate synthase%2C chloroplastic-like |
| Arabidopsis | AT5G04140 (GLU1)glutamate synthase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830292] identity=81.3; qcov=0.988; evalue=0; confidence=high |
| Rice | Os07g0658400 (OsGLU)- identity=82.1; qcov=0.964; evalue=0; confidence=high |
| GO | GO:0006537 (GO:0006537); GO:0016040 (glutamate synthase (NADH) activity); GO:0019676 (ammonia assimilation cycle) |
| KEGG | smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00910 (Nitrogen metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00310 (GATase_2); PF01493 (GXGXG); PF01645 (Glu_synthase); PF04898 (Glu_syn_central) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002714 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057785170.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057785170.1 |
| 3 | Chloroplast | 叶绿体 | 0.40000 | XP_057785170.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057785170.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057785170.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:62505841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B76 |
Chr1:62505850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:62506990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B137 |
Chr1:62507002 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | A10,C38 |
Chr1:62507002 |
AC |
A |
1bp_deletion | CDS_variant | 2 | A10,C38 |
Chr1:62507744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
Chr1:62508026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:62508595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,C26 |
Chr1:62508656 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B69,B9,C15 |
Chr1:62508656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B69,B9,C15 |
Chr1:62510947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B137,C8 |
Chr1:62514435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057785170.1PF00310
GATase_2 109-531 aa
PF04898
Glu_syn_central 557-850 aa
PF01645
Glu_synthase 910-1293 aa
PF01493
GXGXG 1358-1599 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785170.1 |
Pfam | PF00310 |
GATase_2 | Domain | 109 | 531 | 4.8e-177 | 589.6 | Glutamine amidotransferases class-II |
XP_057785170.1 |
Pfam | PF04898 |
Glu_syn_central | Domain | 557 | 850 | 9.6e-107 | 357.3 | Glutamate synthase central domain |
XP_057785170.1 |
Pfam | PF01645 |
Glu_synthase | Domain | 910 | 1293 | 3.9e-156 | 520.6 | Conserved region in glutamate synthase |
XP_057785170.1 |
Pfam | PF01493 |
GXGXG | Domain | 1358 | 1599 | 1.3e-101 | 339.8 | GXGXG motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。