当前解析结果
SmilChr01G004445| 统一新 Gene ID | SmilChr01G004445 |
|---|---|
| 名称 | SmilChr01G004445 |
| 描述 | phosphatidylinositol 4-phosphate 5-kinase 4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 62564470 - 62568808 / - |
| NCBI Gene ID | LOC131002743 |
|---|---|
| GeneID | 131002743 |
| locus_tag | - |
| NCBI Name | LOC131002743 |
| 原始查询 | SmilChr01G004445 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphatidylinositol 4-phosphate 5-kinase 4-like |
| 产物 | phosphatidylinositol 4-phosphate 5-kinase 4-like |
| Arabidopsis | AT3G56960 (PIP5K4)phosphatidyl inositol monophosphate 5 kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824863] identity=66.2; qcov=1.03; evalue=0; confidence=high |
| Rice | Os07g0658700 (OJ1477_F01.115)- identity=56.4; qcov=1.06; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity); GO:0046488 (phosphatidylinositol metabolic process) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01504 (PIP5K); PF02493 (MORN) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002743 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057785196.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057785196.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057785196.1 |
| 4 | Cell projection | 细胞突起 | 0.20000 | XP_057785196.1 |
| 5 | Ruffle | Ruffle | 0.20000 | XP_057785196.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:62565809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:62565833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr1:62566887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
Chr1:62567342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B55,B83,C23,C59 |
Chr1:62567471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,C40,C5 |
Chr1:62568227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:62568248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057785196.1PF02493
MORN 62-84 aa
PF02493
MORN 85-106 aa
PF02493
MORN 108-130 aa
PF02493
MORN 131-153 aa
PF02493
MORN 154-175 aa
PF02493
MORN 177-199 aa
PF02493
MORN 200-221 aa
PF01504
PIP5K 458-756 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785196.1 |
Pfam | PF02493 |
MORN | Repeat | 62 | 84 | 3.5e-40 | 134.2 | MORN repeat |
XP_057785196.1 |
Pfam | PF02493 |
MORN | Repeat | 85 | 106 | 3.5e-40 | 134.2 | MORN repeat |
XP_057785196.1 |
Pfam | PF02493 |
MORN | Repeat | 108 | 130 | 3.5e-40 | 134.2 | MORN repeat |
XP_057785196.1 |
Pfam | PF02493 |
MORN | Repeat | 131 | 153 | 3.5e-40 | 134.2 | MORN repeat |
XP_057785196.1 |
Pfam | PF02493 |
MORN | Repeat | 154 | 175 | 3.5e-40 | 134.2 | MORN repeat |
XP_057785196.1 |
Pfam | PF02493 |
MORN | Repeat | 177 | 199 | 3.5e-40 | 134.2 | MORN repeat |
XP_057785196.1 |
Pfam | PF02493 |
MORN | Repeat | 200 | 221 | 3.5e-40 | 134.2 | MORN repeat |
XP_057785196.1 |
Pfam | PF01504 |
PIP5K | Family | 458 | 756 | 3.8e-102 | 342.1 | Phosphatidylinositol-4-phosphate 5-Kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。